Cucumis melo (muskmelon): 103493011
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Entry
103493011 CDS
T03195
Name
(RefSeq) protein PAT1 homolog 2-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
cmo
Cucumis melo (muskmelon)
Pathway
cmo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103493011
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmo03019
]
103493011
Messenger RNA biogenesis [BR:
cmo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103493011
mRNA degradation factors
5'-3' decay
Decapping complex
103493011
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIA
Motif
Other DBs
NCBI-GeneID:
103493011
NCBI-ProteinID:
XP_008451848
UniProt:
A0A1S3BSF1
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Position
7:complement(23276759..23286861)
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AA seq
808 aa
AA seq
DB search
MEQSDVNDLRDSAENSSANSLFDASRYEFFGQNVVGEVELGGLEEDEDVPLFGSTDEEYR
LFVREESAGLGSLSEMDDLASTFAKLNKVVTGPRHPGVIGDRGSGSFSRESSSATDWAQD
GDFCNWLEQHVFDPECAQEEKRWSSQPQSSVRLPDPKPLYRTSSYPQQQPTQHHFSSEPI
IVPKSSFTSFPPPGSRSQHGSPRHLKNIQSLADGSQLPFSAPNITSLSKSNLQLAGMHHG
LHYGGNMHQYTTPGLSFSSRPQNQWINNAGLLHGDHSNLFNSILQQQLSHQNGLLSPQLL
SAHQQLQQHRMHHPVQPSLAHFAALQSQLYNAHSPSSHRAMLGLSDVREQKPKSQRGKHN
MRSSQQGSETGSQKSDSGSIQFRSKHMTADEIESILKMQHAATHSNDPYIDDYYHQARVA
KKAAGSRLKNAFCPSRLRELPSRSRSGSDQHSHSAPDSLGKIPLASIRRPRPLLEVDPPL
SGSCDGGSEQTISERPLEQEPMLAARITIEDGLCLLLDIDDIDRLLQHNKPQDGGVQLRR
RRQMLLEGLAASLQLVDPLGKSSHGVGPSPKDDIVFLRLVSLPKGRKLLSKLLKLLFPGS
ELARIVCMAIFRHLRFLFGGLPSDPGAAETTSNLSKTVSTCVNGMDLRALSACLVAVVCS
SEQPPLRPLGSSAGDGASIVLKSILERATELLTDPHAASNCSMPNRALWQASFDEFFSLL
TKYCVSKYETIVQSLFSQTPSSTDVIGSEAARAISREMPVELLRASLPHTNEPQRKLLMD
FAQRSMPVSGFSAHGGSSGQMNSESVRG
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
atggaacaatctgatgtcaacgatttgagggactctgcggagaattcctctgccaattca
ctctttgatgcttcacgatatgagttttttggtcaaaatgtcgtgggagaagtggagctg
ggtggtttagaagaagatgaagatgtccctttatttggatctacagatgaagagtatcgt
ttgtttgttcgggaagagagcgcagggttgggatctttatcggaaatggatgatttggca
agtacttttgcaaagttgaacaaagttgttactggaccaagacatccaggagtcattgga
gatcgaggatctggttctttttctcgagaaagttcatctgcaactgattgggcacaagat
ggagacttttgtaattggttagagcagcatgtatttgacccagaatgtgctcaggaggag
aagagatggtcatcccaacctcaatcttctgttcgtcttccagatccgaaacctttgtat
agaacatcctcttaccctcagcagcaacctacacaacaccacttctctagtgaaccaatt
atagtaccaaaatcttctttcacatcctttcctcctccaggaagtaggtcccaacatggt
tcacctcgtcacttaaaaaatattcaatctcttgcggatggaagtcagttacctttctct
gcaccaaatatcacttctttatccaagtctaatttgcagttggctggtatgcatcatggc
ttgcattatgggggcaacatgcaccagtacaccactcccggcctttcttttagtagcagg
ccacaaaatcagtggattaacaacgctggtctattacatggggaccactcaaatctcttc
aacagtatattgcaacagcaactatctcatcaaaatggccttctgtcccctcagttactg
tcagctcatcagcagctgcaacaacacaggatgcaccatccagttcaaccttctttggcg
cattttgcagctcttcagtctcagctttataatgcccattcaccatcctcgcacagagca
atgcttggattgtctgatgtgagggagcagaaacccaagtcccagagagggaagcataac
atgcgttcttctcagcaaggttctgaaaccggtagtcaaaagagtgatagtggatccatc
cagttcagatctaagcatatgacagctgatgagattgagagtatcctgaagatgcagcat
gctgccacccacagtaatgatccatacatagatgactactatcaccaggctcgtgttgcc
aaaaaagctgctggttcaagattaaaaaatgcattttgtccgtctcgattaagagaactt
ccatctcgatctcgtagtggttcagatcagcattctcattctgcacctgattcattggga
aaaataccccttgcttctattcgtagacctcggcccctacttgaagttgatcctccgttg
tcaggttcatgtgatggtggttctgaacagacaatatctgagaggcctctggagcaggaa
ccgatgcttgctgctagaatcaccattgaagatggtctctgtcttctccttgatatagat
gatattgataggcttttacaacataataaaccacaagatggtggagtccagcttagacga
aggcggcagatgttgctggaaggtttggcagcatcacttcagcttgttgatccacttgga
aaaagtagccatggcgttggcccatctccaaaagatgatatcgtgttcttgcgtttggtt
tctcttcccaaaggtcgaaagcttctttctaaacttctgaagctgcttttccctggtagt
gagcttgcacgaattgtctgtatggctatcttccgtcacttacggttcttgtttggtgga
cttccatctgatcctggagcagctgagacaacatctaatctttccaagactgtttctacc
tgtgttaatggtatggaccttcgtgcactaagtgcttgtcttgttgctgttgtctgttcc
tcagagcagccaccactacgcccccttggaagttctgctggagatggggcctctattgtt
ctgaagtccattcttgaaagagctaccgaactattaactgatcctcatgctgctagtaac
tgtagcatgcctaaccgtgcactctggcaggcatcctttgatgaattcttcagtcttctt
accaagtactgtgtgagtaaatatgagactatagtgcagtcattattttcgcagacgcca
tcgagcaccgatgttatagggtcagaggcagccagagccatcagccgtgaaatgcctgtg
gagcttcttcgtgctagtcttccccacacaaatgaaccccagaggaagcttttaatggat
tttgcccagcgttccatgccagtttctggattcagtgcccatggtggaagtagtgggcaa
atgaattcagaatcagttaggggttag
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