Cucumis melo (muskmelon): 103493756
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Entry
103493756 CDS
T03195
Name
(RefSeq) transcription initiation factor TFIID subunit 5 isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
cmo
Cucumis melo (muskmelon)
Pathway
cmo03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
cmo00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
103493756
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmo03021
]
103493756
03036 Chromosome and associated proteins [BR:
cmo03036
]
103493756
Transcription machinery [BR:
cmo03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
103493756
Coactivators
SAGA/TFTC/STAGA complex
103493756
Chromosome and associated proteins [BR:
cmo03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
103493756
STAGA complex
103493756
TFTC complex
103493756
SAGA complex
103493756
SLIK complex
103493756
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
EIF3I
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
WDR55
NBCH_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_IFT122_1st
ANAPC4_WD40
Beta-prop_EML
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
Beta-prop_SCAP
Beta-prop_EIPR1
Beta-prop_DCAF4
Beta-prop_SPT8
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
LisH
PALB2_WD40
WD40_like
KNTC1_N
Motif
Other DBs
NCBI-GeneID:
103493756
NCBI-ProteinID:
XP_008452860
UniProt:
A0A1S3BVN5
LinkDB
All DBs
Position
7:complement(773211..780692)
Genome browser
AA seq
674 aa
AA seq
DB search
MDEELIANFVSAYLKKKGFKETEQAFQEELRHNKTNCSSPSSLVDIDVAKHLLSFSEAEN
IPARYLEGYSKLRSWAYNSLDLYKHELLRVLYPVFIHCFMDLVAKGHIQEARTFFNRFRE
DHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRQGKVNIKICQYSYEMLLQYLHKTQTTVI
LGIINERINFQVFPGQPSSISDDAELVTLTGSTQDTANQINKKEVHWGLLEDSLEERLEK
AAGLLSDSEKAEGETKDGDVDENKKRTAEGGKPGSSIKKVKKDKTASATGKTLRAEANSA
SMAPRVKPELALPIISTEVEQSILEDLRNRVQLSSVALPSVSFYTFINTHNGLNCSSISY
DGALVAGGFSDSSLKVWDMAKLGQQAGNTVLQDENDMSTSDPVTGHTSGKRPYTLFQGHS
GPVHSATFSPIGDFVLSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFSPVGHYFASC
SHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGECVR
IFIGHRSMILSLAMSPDGRFMASGDEDGTIMMWDLSTGRCVTPLIGHTSCVWTLAFSCEG
SLLASGSADCTVKLWDVTSSTKPPRTDENKTGTANRLRSLKTLPTKSTPVYSLRFSRRNL
LFAAGALSKSASTA
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atggacgaagaactgatagcgaattttgtgtcagcatacttgaagaagaagggtttcaag
gaaacggaacaagcttttcaggaagagctacgtcataacaagactaattgttcttctcca
tcttctctcgttgacatcgacgtcgctaagcacttactctccttctccgaagcagagaat
attccagctagataccttgaaggatatagcaagcttaggtcctgggcttataactcacta
gatttgtacaagcatgagttgcttcgtgtgctataccctgtgtttatacattgtttcatg
gatcttgtggctaaaggacatattcaagaagctcgaacctttttcaataggttccgtgaa
gaccatgaaatgatgcacctacgagatttacaaaagttggaaggtgtactatctccctct
catttggaggagatggaatttgctcattctcttaggcagggaaaagtcaatataaaaata
tgccagtactcctatgagatgctactgcaatatcttcataagacccaaaccacagtgata
cttgggattatcaatgaacgcatcaacttccaagttttccctggtcagcctagctcaata
tctgatgatgcggaacttgtgacactcacgggaagcacccaggacactgctaatcagata
aataaaaaagaagttcattgggggttactcgaagattctttagaagaacgcttggagaaa
gctgctggtttgctttcagattctgaaaaagcagagggagaaaccaaggatggtgatgta
gatgagaataagaaaagaacagctgagggaggaaagccaggtagttcaattaaaaaagtc
aagaaggacaagactgccagtgcaactgggaaaactctgagggctgaagctaattcagca
tctatggcaccacgagtgaagccagagcttgctttacccataatatcaacagaggtggaa
caatctattcttgaagacttgaggaaccgtgtgcagttgagttccgtagctctgccatca
gtcagcttttataccttcattaatacacacaacggtttaaactgttcatcaatatcatat
gatggagctttagttgcgggtggattctcagactcttctttgaaggtttgggacatggca
aagctaggacaacaagctggaaatactgttttgcaggatgaaaacgatatgtctactagt
gatccagtgacaggtcatacgagtgggaagaggccttatacattatttcaaggtcattct
gggcctgttcactcggccactttcagtcccattggggacttcgttctttcatcctctgca
gacacaactattcgattgtggagcacaaaactaaatgccaatcttgtttgctacaaaggt
cataattacccagtatgggatgttcagtttagtccggttggacattattttgctagttgc
tcacatgatcgaactgcaaggatctggtctatggatagaattcaacctttaaggatcatg
gcaggacatctatctgatgtggattgtgttcaatggcatgccaactgcaactacattgca
actggctcgagtgacaaaactgttagattgtgggatgtccagagtggggaatgtgttcga
attttcattggccacaggagcatgattttgtcgttggcaatgtcacctgacggtcggttc
atggcatctggtgatgaagacggtacgattatgatgtgggacctatcaacgggtcgctgt
gttacacctttgattggacacacatcatgcgtttggactcttgctttcagttgtgagggg
tctctcctcgcctccggttctgccgactgcacagtgaaattatgggacgtaacttcaagc
accaagccaccaagaacagatgaaaacaaaactggaactgccaatagacttagatccttg
aagactctaccaaccaagtcgactccggtttacagtttgcggttctctcggaggaatctc
ttatttgcagctggggctctctcaaaaagtgcatcaactgcttaa
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