Cucumis melo (muskmelon): 103493866
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Entry
103493866 CDS
T03195
Name
(RefSeq) tetratricopeptide repeat protein SKI3 isoform X1
KO
K12600
superkiller protein 3
Organism
cmo
Cucumis melo (muskmelon)
Pathway
cmo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103493866
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmo03019
]
103493866
Messenger RNA biogenesis [BR:
cmo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
103493866
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_11
TPR_2
TPR_1
TPR_16
TPR_17
TPR_14
TPR_12
TPR_9
TPR_8
TPR_CcmH_CycH
TPR_19
ARM_TT21_C
TPR_10
TPR_7
BTAD
TPR_MalT
Motif
Other DBs
NCBI-GeneID:
103493866
NCBI-ProteinID:
XP_008453040
UniProt:
A0A1S3BVA5
A0A9I9DE59
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All DBs
Position
7:complement(114359..132890)
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AA seq
1183 aa
AA seq
DB search
MEEIALEKEHEEESETSCITARQLQEAVDAHPDDPSSHFKLGIFMWENGASHDKAAAADH
FLKSAKLDPENAAAFKYLGDYYATFSVDVQRALKCYQRAVSLDVDDFHSGEALCDLLHHE
GKESIEVAVCKEASSKSPKAFWAFRRLGYLQVYQNKWTEAVSSLQHAIRGYPHCADLWEA
LGLAYQRLGRFTAATKSYARAIEIEGERILAWVESGNIFLMLGLFKKGVEHFQQALEISP
KSITAQFGLSSGLLGWAKEYINRGAFKWASFLLEEASKVARGSTHLAGNSSCIWKLLGDI
QHTYAKCYPWMEDWGQCSDSFRTSILSWKQTRILALFSAKCSYQQALHLAPWEANIYTDI
AITLDNISSLNDDSGPRFYSWQISEKMTLGALMLEGDNHEFWVAMGCISNHVALKQHAFI
RALQLDGSLAVAWAYLGKLYWNRCEKQLARQAFDYARSIDPSLALPWAGMSADLNVREST
SEEAFESCLRAAQILPVAEFQIGLAKLSLQAGHLSSPQVFGAIRQAVQLAPCYPESYNLS
GLAFEAQLDYQSAVAAYRLAHLTISHFSDRVPRSHVRDISINLARSLCMVGNFFEALQEC
ENLSREGMLDNEGLQVYAFSLWKLGENDQALSAVRTLASGICTMEIARTAASIGFICRLL
CSISGLDSAINSITKMPTNFFQSSKLSFLVAAVHALDHSDRLEAIVLSSRSCLQSHEEIT
RMHSLIALSKLIKYRTNNCLGFLNGVMHLRKALHAYPSSSLIRNLLGYLLLSNEERDDYH
TATRCCNMLYGFDQQNKGLKSAFEIHGAGAVACYTIGTSHPRFTFPTCSYQCQNGIGTIR
QLQKCLRQEPWNYDARYLLILNILQKAREERFPCHLCVTIERLILIAFSDEPCFTKDVSH
QYKKFQLLLCASEISLQGGDQIKCINYAKAASSISLPEIYLFYAHLLLCRAYAAENDSNN
LRKEFIKCLDLKTDNYLGWVCLKFIASRYELHDESNILELSLKKWSVESKSLQHMVMPMF
VDGLISFGSQDFVAAEKYFAQACFSGHDGCLLLCHGVTCMELARQLCSPHFLRLAVNSLL
KAQVISVPIPIVSIMLAQAEGSLGLKENWESGLRLEWSSWPPDMRSAEILFQMHLLAKQS
KVVSDQFRVEICQSPLRWVLRAIHVNPSCVRYWNVLQSLWNEG
NT seq
3552 nt
NT seq
+upstream
nt +downstream
nt
atggaagagattgcgttagaaaaagaacacgaagaagaatcggagacctcttgtattaca
gcaagacaattgcaagaagcagttgatgctcatcctgacgatccctcgtcccatttcaaa
ctcgggattttcatgtgggaaaatggagcaagccacgataaggcggctgccgctgatcat
tttctgaaatcagcgaaattagaccctgagaatgctgccgctttcaagtatctaggggat
tattacgccacattttctgtcgatgtccaaagggctctcaagtgctaccaaagagctgtc
agtctcgacgtcgacgatttccactctggagaagcattgtgcgatctgttgcatcacgaa
ggaaaggagagtatagaggttgctgtatgcaaagaggcttcctctaagtcacccaaggcc
ttctgggctttccggaggttgggatatttgcaggtttatcaaaataaatggactgaagct
gtttcaagtcttcagcatgccattcgaggatatcctcattgtgctgatttgtgggaagcc
ctgggtcttgcatatcagcgacttggcaggtttactgctgcaactaagtcttatgcacgg
gctattgaaattgaaggagagagaatccttgcttgggttgagagtggaaacatcttcttg
atgctcggtttgttcaaaaaaggagttgaacactttcagcaagctctagagatatcacct
aaaagtattactgcacaatttgggctctcttcagggcttcttggttgggcgaaggaatac
attaataggggggcatttaaatgggcatcctttctattagaggaagcatctaaagttgca
agaggaagtactcatttagctggaaactcgtcatgtatctggaagttgcttggagatatt
cagcacacttatgcgaaatgttatccatggatggaagactggggacaatgctcagactcc
tttagaacttctatcctttcctggaagcagactcgcattttggctttattttctgccaaa
tgttcctatcagcaagctctgcacttggctccgtgggaagctaacatttacacagatatt
gctattactttagataatatttcatctttgaatgatgattctggacctcgattctattcc
tggcagatatctgaaaagatgacactaggggccttgatgctcgagggtgacaatcatgaa
ttctgggtggcaatgggatgcatctctaaccatgttgcgttaaagcaacatgcttttatt
agggcattgcagttagatggatctttagctgtagcatgggcttatcttgggaagttatac
tggaataggtgcgaaaagcaattggcgagacaggcttttgattatgccagaagtatagat
ccttctctagcattaccctgggctggcatgtcggctgatttgaacgttagggagtcaaca
tcggaagaagcattcgagagctgtttaagagctgcacaaatacttcccgtggcggaattc
caaattggtcttgccaagctttctctgcaggcgggccatctttcatctccacaggtgttt
ggagctatacgtcaggctgttcaacttgcaccttgttaccctgaatcctataatctaagt
ggactagcttttgaggcacaattagattatcaatctgctgttgctgcttatcgtttagca
cacctcacaattagccacttttcagatagagttccaaggtctcatgtcagagatatatcg
atcaacttagccagatcactctgcatggtaggaaatttctttgaagctttgcaggaatgt
gaaaatttaagtagagaaggcatgctcgacaatgaaggtttgcaggtttatgctttctct
ctatggaaactaggagagaatgaccaggcccttagcgctgtgagaacacttgcttctggc
atctgtaccatggaaatcgcacgtactgctgcatctattggtttcatatgcagactgttg
tgttcaatatctggattggattccgcaattaacagtattacgaagatgccgaccaatttt
ttccagagttcaaaattgagttttttagtggctgctgttcatgcccttgatcatagtgat
cggcttgaggccattgtcttaagcagccgttcctgcctccaatctcatgaagagatcact
agaatgcacagtttgattgctctttctaagctgatcaaatatcgaacaaataattgcctt
ggattcctcaatggagtgatgcatcttcgaaaagctcttcatgcataccccagcagtagt
ttgatcaggaacttgcttggttatcttttgctgtccaacgaagaaagggatgactatcac
acagctactaggtgctgcaacatgttgtatggttttgaccaacagaacaaaggtctgaaa
tcggcatttgaaattcatggtgctggagctgtggcctgctatacaattggcacgagtcat
ccgaggtttactttcccaacatgttcgtatcagtgccagaatgggattgggaccatccgt
caacttcaaaaatgcttacgtcaagagccgtggaattatgatgctcgatatcttcttata
ctaaacattctgcagaaggcacgtgaagaaagatttccctgtcatctatgtgtgactatt
gagcggctaatcttgattgccttttctgatgaaccatgttttacgaaagatgtgtctcat
caatataagaagtttcagcttctactttgtgcctctgagatcagtttgcagggtggtgac
caaattaaatgtatcaactatgccaaagctgcttcctctatttcacttcctgaaatttat
cttttttatgcacacttgttactgtgccgagcctatgctgcagaaaatgattctaacaac
cttcgtaaagagttcataaaatgtttggatttgaagacagataactatcttggatgggta
tgtcttaaattcattgcatctcgatacgagcttcacgatgaatccaatatcttagaactt
agtttgaagaaatggtctgtagagagcaagagtctgcaacacatggtaatgcccatgttc
gtcgacggtttgatatcctttgggagtcaggattttgtggctgcagagaagtattttgca
caagcttgtttttctggacatgatggttgtctcctcctctgtcatggtgtaacctgcatg
gaacttgcaaggcagctttgcagtcctcactttttgaggttggctgtaaacagtctcctt
aaagctcaagtgatttctgttccaataccaattgtctcgatcatgctggcacaagcagaa
gggagtcttggtttgaaggaaaattgggagtcaggccttcgtttggaatggtcctcttgg
ccaccagatatgaggtctgcggagatcttgtttcaaatgcatctgcttgcaaaacagtcg
aaagttgtttctgatcaattcagggttgaaatatgtcagtctcctctgagatgggttctt
cgcgctatccatgtaaacccttcttgtgtgagatactggaatgtgctgcaaagcttgtgg
aatgagggatga
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