Cucumis melo (muskmelon): 103494032
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Entry
103494032 CDS
T03195
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
cmo
Cucumis melo (muskmelon)
Pathway
cmo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cmo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103494032
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cmo03041
]
103494032
Enzymes [BR:
cmo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103494032
Spliceosome [BR:
cmo03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
103494032
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SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
WHD_HA2
Helicase_C
AAA_22
DEAD
AAA_19
AAA_30
PWI
nSTAND3
AAA_16
nSTAND_NTPase5
ABC_tran
Motif
Other DBs
NCBI-GeneID:
103494032
NCBI-ProteinID:
XP_008453258
UniProt:
A0A1S3BVU3
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All DBs
Position
2:24294382..24309692
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AA seq
1053 aa
AA seq
DB search
MGGENDLKTWVSDQLMSLLGFSQPTIVQYMIGLSKQATSPADVVNKLVIDFSLPSSGETL
AFAEGIFSRVPRKQSSGLNLYQKQEREAAMLARKQKTYALLDADDEDDVEDKGRSSDLKE
TENRKRHFRRKNEYQEDEDDEKESALERENRQVKRRASSSEDDSSESEEERLRDQREREQ
LERNIRERDAAGTKKLTEQKLSRKEEEEAIRRSEALENNGIDTLRKVSRQEYLKKREEKK
LEEIRDDIEDEQYLFEGVKLTDAEYRELRYKKEIYELVKKRTDEADDVNEYRMPEAYDQE
GGVNQDKRFAVAMQRYRDSGAADKMNPFAEQEAWEEHQIGKATMKFGSKNKKQSSDDYQF
VFEDQIEFIKASVMEGDEFVDERQTESLEKSKAQSALEKLQEERKTLPIYPYRDQLLQAV
NDYQVLVIVGETGSGKTTQIPQYLHEAGYTKRGKVGCTQPRRVAAMSIAARVSQELGVKL
GHEVGYSIRFEDCTSDKTVLKYMTDGMLLREFLGEPDLASYSVIMVDEAHERTLSTDVLF
GLVKDIARFRPDLKLLISSATLDAEKFSDYFDSAPIFKIPGRRYPVEINFTKAPEADYLD
AAIVTALQIHVTKPPGDILVFLTGQEEIEAAEEIMKHRTRGLGTKIAELIICPIYANLPT
ELQAKIFEPTPVGARKVVLATNIAETSLTIDGIKYVIDPGFSKIKSYNPRTGMEALQVSP
ISKASANQRAGRSGRTGPGMCFRLYTAYSYYNEMEDNTVPEIQRTNLANVVLTLKSLGIH
DLVNFDFMDQPPSEALLKALELLYALGALNKLGELTKLGRRMAEFPLDPMLSKMMVASEK
FKCSDEIISIAAMLSIGNSIFYRPKDKQVHADNARMNFHTGNVGDHIALLKVYNSWRETN
FSTQWCYENYIQVRSMKRARDIRDQLEGLLERVEIELTSNLNDLDAIKKTIISGFFPHSA
KLQKNGSYRTVKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELKPEWLVEI
APHFYQLKDVEDLSSKKMPRGQGRAGAPGEAGS
NT seq
3162 nt
NT seq
+upstream
nt +downstream
nt
atggggggcgaaaatgacttgaaaacatgggtttcggatcagttaatgtcattgcttggt
ttttctcagccaacgatcgtgcagtatatgattggactatccaaacaagcaacatcacct
gccgatgttgtgaacaagttggtgatagatttttccttgccatcttctggtgaaacactg
gcttttgctgaaggaattttctccagagtgccacgcaagcaatcatctggtttaaatctt
tatcagaagcaagagagagaagctgcaatgttggcaagaaagcaaaagacatatgcactg
cttgatgctgatgacgaagatgatgttgaagataaaggacgtagcagtgatctcaaagaa
acagaaaatcgaaagagacattttagaaggaaaaatgaatatcaagaagatgaagatgat
gaaaaggaaagtgctcttgaaagagaaaatagacaggttaaacgacgggcatccagttct
gaagacgatagctctgagtcggaggaggagcgattgcgagatcaaagagagagggagcaa
ttagagcgaaatataagggaaagggatgctgcaggaaccaaaaagttaacggagcaaaaa
ttgagcaggaaggaggaagaagaggcaattcggagatcagaagctttggagaataatgga
attgatactttgaggaaagtttcaagacaggagtatttaaagaaaagggaggagaagaaa
ctggaagaaatcagagatgatatagaagatgagcaatatctttttgaaggtgtaaagctt
actgatgcagaatatcgggagctaaggtataagaaggaaatatatgagcttgtgaagaag
cggacagatgaggctgatgacgtcaatgagtacaggatgcctgaagcttatgatcaggaa
gggggtgttaatcaggataagaggtttgcggtggcaatgcaacggtatagggattcaggt
gctgccgataaaatgaatccgtttgcagaacaagaggcatgggaggaacaccaaataggg
aaagcaacgatgaaatttggctcgaaaaacaaaaagcaatcatcagatgactatcagttt
gtatttgaggatcagattgagtttattaaggcatcagttatggaaggcgatgagtttgtt
gatgaacgtcagactgaatcacttgagaagtccaaggctcagtcagctttggagaagctg
caggaggagaggaaaacattgccaatctatccatatcgtgatcagttacttcaagctgtc
aacgattatcaggttcttgtaattgttggtgaaactggctctgggaagaccacacagata
cctcaatatcttcatgaagctgggtacacaaagcgaggaaaagttggatgcacacaacca
cgtcgagttgctgctatgagcattgctgctcgagtatctcaagaactgggtgtcaagctt
gggcatgaggttggttattcaatacgttttgaggactgtacgtcagataagaccgtttta
aagtacatgacagatgggatgttgttacgagaattccttggtgaacctgaccttgcaagc
tacagtgtcataatggtggatgaggctcatgaaagaacattatcaactgatgttctattt
ggattagtaaaggacattgctaggtttcgacctgatttgaagttgctaatttcaagtgca
acacttgatgctgagaagttcagtgattactttgattcggcaccaatatttaaaattcct
ggtagacgttatccggtagaaattaacttcacaaaagctccagaagcagactatttagat
gcagcaatcgtgactgcacttcagatccatgtcacaaagcctccaggagatatattggtg
tttctcactggtcaagaagagattgaagcggctgaggaaataatgaaacatagaactcgg
ggactgggcaccaaaattgcagaactcattatatgccccatatatgctaacttaccaaca
gagctacaggctaagatatttgaacccacacccgttggagcaaggaaagtcgtcctagca
actaatatagcagagacatccttgacgattgatgggataaaatatgtcattgatcctggt
ttttcaaaaataaagtcctataacccaaggactgggatggaggcattgcaagtgagtcct
atctctaaagcatcggcaaatcagagagcaggccggtctggacgaacaggccctgggatg
tgctttcgtttgtatactgcttatagttattataatgagatggaagacaatacagtacca
gaaatacaaagaacaaaccttgctaatgtggtgcttacacttaagagccttggtattcat
gacttggtaaactttgattttatggaccagcctccatctgaagcattgctaaaagctttg
gaactgctttatgcacttggtgctctaaataaacttggtgaactaactaagttgggtagg
cggatggcagagtttcctcttgaccccatgctttctaagatgatggttgcttctgaaaaa
ttcaagtgttcagatgagattatttctattgcagctatgctttctattggaaattctatt
ttttaccgtccaaaggataaacaagttcatgcagacaatgctcggatgaattttcacact
gggaatgtgggggatcacattgcactgttgaaggtctacaactcatggagggaaactaat
ttctctacgcaatggtgctacgagaactacatccaggttagaagtatgaaacgtgccaga
gatatcagagatcaacttgaagggcttttggaaagagttgaaatcgaattaacttcgaat
ttgaatgacttggatgcgataaagaagaccataatatctggatttttccctcactctgct
aagttgcaaaagaatggctcttatcggaccgttaaacatccgcagacagttcacatacat
cccagctcagggttagctcaggttcttccaagatgggttgtataccatgaattagtatgt
acctcaaaagaatatatgagacaggtaacggagttgaagcctgaatggttggttgaaatt
gctccacacttctatcagctcaaggatgttgaagatttgagttcaaagaagatgcctcgc
ggacaaggtcgtgcaggtgctcctggagaagcaggaagctaa
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integrated database retrieval system
