Cucumis melo (muskmelon): 103494045
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Entry
103494045 CDS
T03195
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit B
KO
K07466
replication factor A1
Organism
cmo
Cucumis melo (muskmelon)
Pathway
cmo03030
DNA replication
cmo03420
Nucleotide excision repair
cmo03430
Mismatch repair
cmo03440
Homologous recombination
cmo03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cmo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
103494045
03420 Nucleotide excision repair
103494045
03430 Mismatch repair
103494045
03440 Homologous recombination
103494045
03460 Fanconi anemia pathway
103494045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cmo03000
]
103494045
03032 DNA replication proteins [BR:
cmo03032
]
103494045
03400 DNA repair and recombination proteins [BR:
cmo03400
]
103494045
Transcription factors [BR:
cmo03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
103494045
DNA replication proteins [BR:
cmo03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
103494045
DNA repair and recombination proteins [BR:
cmo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
103494045
MMR (mismatch excision repair)
103494045
DSBR (double strand breaks repair)
HR (homologous recombination)
103494045
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
PIH1_CS
Motif
Other DBs
NCBI-GeneID:
103494045
NCBI-ProteinID:
XP_008453278
UniProt:
A0A1S3BX02
LinkDB
All DBs
Position
2:complement(24212401..24216452)
Genome browser
AA seq
623 aa
AA seq
DB search
MASAPTAGGISKILSNPSPDSPTDVPDVVVQVIDLKATGNRYMFTASDGDMKLKAILPSN
LTSDVISGNIQNLGLIRILDYSLNDIPNKSDKYLIVAKCVVVSPALEKEVKTEVKKEEAG
IVLKPKVELDDKSKFNNGSGILLKPKQELVAKSAAQIVHEQRMNMAPAARMSMTRRVQPL
VYLNPYLGDWTIKVRVTDKGNLRTYKNAQGEGCVFNVVLTDEDGTQIQATMFNDAARKFY
EKFSLGKVYYVSRGTLKVANKKFKTVQNDYEMTLNVNSQVDEVSSEAAFVPETKYNFVKI
DMLGPHVNGRDLVDVIGVVQNVSSTMSIRRKINNETAPKRDVTIADETKKTVVISLWNDL
ATTVGQELLDIADQSPIIAVKYLRVGDFQGVSLSTISRSSITINPDIKEAHDLRSWYDAE
GKAVSMSSVSSGMSPSTKSGSRSMYSDRVSLSHINQNKSLGEEKPMFFSIRAYVSFIKPD
QTMWYRACKTCNKKVTEAIGSGYWCDNCQKNDEECSLRYIMVVRVSDASGEVWVSTFNEE
AERIIGCSADELDQLKSQIGEENSYQLKLKEATWVPHLFRVSVSQNEYNNEKRQRITVRS
VAPVDFAAESRFLLEEIAKMKAS
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcgcaccaactgctggcggaatatcaaagattttgtcaaatccatcaccggac
tcccccaccgatgtcccggacgttgtggttcaggtcattgatctcaaggcgacgggaaat
cgctacatgtttactgctagcgatggcgacatgaagcttaaagccattcttccatcaaat
ctgacttctgacgtcatttctggaaacattcaaaatttggggcttattcgcattcttgac
tactctctcaatgatattccgaacaagtcagacaagtatttaatagtggcaaaatgtgtg
gtggtttctcctgctttagaaaaggaggtaaaaactgaggttaagaaagaggaagcgggc
attgttttgaaaccgaaggtagagctcgacgataagagcaaatttaacaatggatctggt
attcttctgaaaccaaagcaagaattggttgccaaatcagctgctcagattgtacacgag
cagcgtatgaatatggcaccagctgcccggatgtccatgacaaggcgagttcagcccctt
gtctacttaaacccttacctgggagattggaccatcaaagttcgtgttactgataaagga
aacctgcgtacatacaagaatgctcaaggagaaggttgtgttttcaatgtagtgttgaca
gatgaagatggtacacaaatacaggcaacaatgttcaatgatgctgcaaggaagttctat
gagaagttttccctcggcaaagtctattatgtttccaggggaactttgaaagttgccaat
aagaaatttaagactgttcaaaatgattatgaaatgactttgaatgtgaattctcaagta
gacgaggtcagcagtgaagctgcttttgttcctgaaacaaaatataattttgtcaagatt
gatatgttaggtcctcacgtgaatggaagagatcttgttgatgtaattggagttgttcaa
aatgtttcttctacaatgagcattcgaaggaaaatcaacaatgagacagctccaaaacgt
gatgtaaccattgctgatgaaacgaagaagacagttgtgatatctttgtggaatgatctt
gccaccactgtagggcaggagttgcttgacattgccgaccaatctcccataattgcagtg
aaatatcttagagttggagactttcaaggtgtatctttgtcgacaataagcaggagctca
attacaattaaccctgacataaaggaagcacatgatttgagatcatggtatgacgctgaa
ggtaaagccgtatccatgtcttctgtaagctccggcatgagcccatcaactaagagcggt
tctaggtccatgtactctgaccgggtttccttatctcatataaaccaaaacaaatctttg
ggagaagaaaagccaatgttcttcagcattagagcatatgtcagctttatcaaacctgat
caaacaatgtggtatcgtgcttgcaaaacatgcaacaagaaggtaactgaagccatcgga
tctggctattggtgcgacaattgccagaaaaacgatgaagaatgcagtttaaggtacata
atggttgtgagagtgtctgatgcaagtggtgaagtttgggtctctacattcaacgaagaa
gcagagagaatcattggatgctctgctgatgaacttgatcagctcaaatcgcagattggt
gaggagaattcatatcaacttaaactcaaagaagccacatgggttccccacttatttcga
gtcagcgtttcacagaacgaatacaacaatgagaagagacaaaggatcaccgtcaggtca
gttgctccagtcgattttgctgctgagtccagatttttgctagaagagatagcaaaaatg
aaagcttcgtaa
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