Cucumis melo (muskmelon): 103494106
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Entry
103494106 CDS
T03195
Name
(RefSeq) DNA mismatch repair protein MSH2 isoform X1
KO
K08735
DNA mismatch repair protein MSH2
Organism
cmo
Cucumis melo (muskmelon)
Pathway
cmo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cmo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
103494106
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cmo03400
]
103494106
DNA repair and recombination proteins [BR:
cmo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
103494106
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
ATG17_like
VMAP-M1
Motif
Other DBs
NCBI-GeneID:
103494106
NCBI-ProteinID:
XP_008453367
UniProt:
A0A1S3BX85
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Position
2:complement(23748072..23755700)
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AA seq
942 aa
AA seq
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MDDNVDERSKLPELKLDAKQAQGFLAFFKTLPPDSRAVRFFDRRDYYTAHSDNAVFIAKT
YYRTTTALRQLGNASESLSSVSVSKNMFESIARDLLLERTDHTLELYEGSGSNWRLIKSG
SPGNIGSFEDVLFANNEMQDSPAIVALFPYFRDNGCIVGLGYVDLTKRAMGMAEFLDDSH
FTNVESALVGLGCKECLLPLESGKSGDIKPLHNVLTKCGVMLTERKKSEFKMRDLVQDLS
RLVKGSVEPVRDLVSGFEFAPAALGALLAYAELLADESNYGNYNIQKYNLDSYMRLDSAA
IRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVKEISSRLDLVQAF
VEDTALCQDLRQHLKRISDIERLTHYLEKRRAGLQHIVKLYQSSIRLPFIKNALENYEGQ
FSSLIKEKYLEFLETCTDNDHLNKFNNLVETAIDLDQLENGEYMISSSYDATLSKLKNVQ
ESIEQQIQDLHRQVANDLDLPVDKALKLDKGTQFGHVFRITKKEEPKVRKKLSTHFIVLE
TRKDGVKFTNTKLKKLGDQYQKIVEEYKSCQKDLVHRVIETASSFNEVFKPLAELLSELD
VLLGFADLASSCPTPYTRPDITSSDEGNIILEGSRHPCVEAQDWVNFIPNDCKLVRGKSW
FQIITGPNMGGKSTFIRQVGVNILMAQVGCFVPCDKASISVRDCIFARVGAGDCQLRGVS
TFMQEMLETASILKGATEKSLIIIDELGRGTSTYDGFGLAWAICEHLVEVIKAPTLFATH
FHELTALAHGNTDLDSHGKQMVGVANFHVSAHIDSSNHKLTMLYKVEPGACDQSFGIHVA
EFANFPSSVVALAREKAAELEDFSTDTTAPNTNGKEIPSKRKREFSSDDMSKGVARARQF
LEEFSNLPLDKMDLKEALQQVSQLRDGLKKDAVDSNWLQQFL
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atggatgacaacgttgatgagcgaagcaaacttcccgagctcaaacttgatgctaagcag
gctcaagggtttctagcgttcttcaaaaccctaccccctgactcaagagctgttcgattt
tttgatcgtcgggattactatactgcccatagcgataatgcagttttcattgcaaagacc
tattaccgtactacgactgctttgcggcaactgggcaatgcatctgaatccctttctagt
gtgagtgttagcaaaaatatgttcgaatccattgctcgagatcttcttttggaaagaaca
gaccatacactggagctttatgagggtagtggttcgaattggagattgatcaaaagtgga
tcacctggcaatattggaagttttgaagatgttttgtttgcaaataatgaaatgcaggat
agtcctgctattgtggcactgtttccatacttcagagataatgggtgcattgttggacta
ggctatgttgatttaacgaaaagagcgatggggatggcagaatttcttgacgatagccat
tttacaaacgtggagtcagctttggttggtcttggttgtaaggaatgccttctgcctcta
gaaagtggaaagtctggtgatataaaacctttacataatgtattgacaaagtgcggcgtg
atgctaacagagaggaagaaatcagaatttaaaatgagagacttggtgcaggatctttcg
aggctcgtcaaaggttctgttgaacctgttcgagatttggtatctggatttgaatttgca
cctgctgccttaggagcactgctggcgtatgcagaattactggcagatgaaagcaattat
ggaaactataacatccagaagtacaatcttgatagctacatgaggctagactctgctgcc
attagagcattaaacgtcctagagagcaaaaccgatgcaaacaaaaacttcagtttgttt
ggtcttatgaatagaacctgtactgctggaatgggtaaaagattgcttcatatgtggtta
aaacagcctctgttagatgtcaaagaaattagttccagactggatcttgttcaagcgttt
gtggaggacactgctctctgccaagatttgagacagcatctcaaacgaatctcagatatt
gaacgattgacgcattatcttgagaagagaagagctggattacagcacatcgttaaactt
tatcagtcaagtataaggcttccattcattaaaaatgccttggagaactacgaaggacaa
ttttcctcgctgatcaaggaaaagtacttggaatttctagagacctgtactgacaatgat
cacctgaacaagttcaataatctcgtggaaactgctattgatcttgatcagcttgagaat
ggagaatatatgatttcatctagttatgatgctactctttccaaattgaagaatgtgcaa
gaatcaatagagcagcaaatacaggacttgcataggcaagttgctaatgatcttgatctt
ccagttgacaaggctttgaagttagacaaaggtacacaatttggacatgtttttagaatt
actaagaaagaagaaccaaaagtaagaaaaaagctctccacccacttcattgttcttgaa
acccgaaaagatggagtgaagtttacaaataccaaacttaaaaagttgggtgaccagtat
cagaaaatagtcgaggagtacaaaagttgccagaaagatttggttcatcgagtaattgaa
actgcttcatccttcaatgaggtattcaaacctttggccgagttgctctctgaattggat
gttttacttggttttgctgatttggcctctagctgtcccactccttatactagaccagac
atcacttcatcggatgagggaaatattatattggaaggaagtaggcatccttgtgtggag
gctcaagactgggttaatttcataccaaatgattgtaaactagtaaggggtaaaagttgg
ttccagatcattactgggcctaacatgggtggaaaatctacatttatccggcaggtagga
gtgaacattctaatggcacaagtaggttgttttgttccctgtgacaaagctagcatttct
gttcgtgactgcatttttgcccgcgtaggtgcaggtgactgtcaacttcgtggagtttct
acctttatgcaagagatgcttgaaactgcatctatactgaagggagctacagagaaatct
ttgataatcattgatgaattgggccgtgggacatccacttatgatggatttggtctagca
tgggccatttgtgaacatcttgttgaagttattaaagcacccactttgtttgcaacccac
ttccatgaacttactgcactagctcatgggaatactgatcttgattcccatggaaagcaa
atggtcggtgtggcaaattttcatgtcagtgcacacatagactcatcaaatcacaagttg
acaatgctatacaaggttgaacccggagcttgtgatcaaagctttgggattcatgtagca
gaatttgctaattttccttctagtgtcgtggcacttgccagagaaaaggctgctgaactg
gaagatttctccaccgatacaactgctccaaacactaatgggaaagagataccatcaaag
agaaaacgtgagttcagttcagatgacatgtccaaaggcgtagcacgggctcgccagttc
ctagaggagttttctaatctgcccttggataaaatggatctgaaggaagctctacaacaa
gtgagtcaattacgagatggtttgaagaaggatgccgtggactctaattggctccaacaa
ttcctttga
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