Cucumis melo (muskmelon): 103494155
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Entry
103494155 CDS
T03195
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
cmo
Cucumis melo (muskmelon)
Pathway
cmo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103494155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmo03019
]
103494155
03012 Translation factors [BR:
cmo03012
]
103494155
Enzymes [BR:
cmo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103494155
Messenger RNA biogenesis [BR:
cmo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
103494155
Translation factors [BR:
cmo03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
103494155
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
AAA_19
nSTAND3
T2SSE
AAA_16
ATPase
PhoH
AAA_11
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
103494155
NCBI-ProteinID:
XP_008453451
UniProt:
A0A1S3BWC5
LinkDB
All DBs
Position
2:complement(23307379..23315744)
Genome browser
AA seq
1215 aa
AA seq
DB search
MPYSSSFFNSYFRRTSMSISFKPTSPFPFSTRFTPWIPRLFTRRNISMGFVNLHHSRPAT
LSGVVRCSTTQSKWVEVALKEKQQDHVKGFKQRNIAFPLWQHQSCYNYGRFACDDVSSDE
SDVEFGSPQAQRSSSTLDNVDEWRWKLTMLLRNNEEVEVVSREKKDRRDFEQLSALATRM
NLHSRQYSRVVVFSKDPLPNYRPDLDDKRPQREVVLPFGVQREVEGHLRLYQSSHKSVSR
GCFSNSYLPNSGIAENCANNNGLFQHQEPSTTQSIVMEKILRRKSLLLRNQQQDWQESLE
GQKMMEFRKSLPAFKEREALLKAISQNQVVVVSGETGCGKTTQLPQYILESEIEAARGAS
CSIICTQPRRISAMTVSERVAAERGEKLGESVGYKVRLEGMKGRDTRLLFCTTGVLLRRL
LVDRNLRGVSHVIVDEIHERGMNEDFLVIVLKDLLPRRPDLRLILMSATLNAELFSSYFG
GAPTMHIPGFTYPVRAHFLENILEITGYRLTPYNQIDDYGQEKAWKMQKQAQALKKRKTQ
IASSVEDAFEAANFSAYSPRTRESLSCWNPDSIGFNLIEHVLSYIVQKERPGAILVFMTG
WDDINSLKDQLQSHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEEGVRKIVLATNMAET
SITINDVVFVVDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYP
RCVYDAFTDYQLPELLRTPLQSLCLQIKSLQLGSISEFLSNALQPPEPLSVQNAIDYLKT
IGALDKKENLTVLGKHLSVLPVEPKLGKMLILGAIFNCLDPIMTIVAGLSVRDPFLMPSD
KKDLAESAKAHFAARDCSDHLALVRAYQGWRDAEKQQSGYEYCWRNFLSMQTLRAIDSLR
KQFFFLLKDSGLVDYDSEKCNNSNYDEHLIRAIICAGLFPGICSVVNKEKSVALKTMEDG
QVMLYSNSVNAGYPKIPYPWLVFNEKVKVNSVFLRDSTGVSDSILLLFGGNISRGGLDGH
LKMLDGYLEFFMKPALAETYLSLKGELDELVHQKLLNPKLAMEPHNELLSALRLLISEDR
CEGRFVFGRHMPVPSKKAITDSPPRQKHGDGGGGDNSKGQLQTLLVRAGHETPTYKTKQL
KNNQFRSTVIFNGLNFVGQPCGSKKLAEKDAAAEALLWLQGETHSSSQAIDHASILLKKS
KKKNTKPSFHGAKWS
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
atgccttactcatcatccttcttcaactcctatttcaggaggacttccatgtccatctcc
ttcaaacccacttctccttttccattttcaacccgtttcacaccttggattcctcgtctt
ttcacccggagaaacatttcaatggggtttgtcaacttgcaccactcccgtccggcgact
ctttctggtgttgttcgttgttccaccacccaatccaagtgggttgaagttgccttgaag
gagaaacaacaggaccatgttaagggtttcaagcaaaggaatattgcgttcccactttgg
cagcatcagtcctgctataattatggtcgctttgcgtgtgacgatgtttctagtgatgaa
tctgatgtcgaatttggctctccccaggcccaaaggagttcatcaacccttgataacgta
gatgagtggagatggaagttaactatgcttctacgaaacaatgaggaagtagaagtagtg
tcaagggagaaaaaggatagacgtgattttgagcaactttcagcattggcaacccgaatg
aatttgcatagccgtcaatattccagagttgttgtatttagtaaagatcccctgccgaat
tataggccggacctggatgataagcgaccacagagagaggtggtcttaccttttggtgtc
caaagggaagttgaaggtcatctaagattgtaccaatcttctcacaagtctgtgtcaaga
ggatgtttttcaaacagttacttgccaaattctggcattgctgaaaactgtgctaacaat
aatggactgtttcagcaccaggaaccttcaacaacacaaagcattgtcatggagaaaatt
cttcgccgcaaaagtttgctattgaggaatcagcagcaagattggcaggaatctcttgag
ggccaaaaaatgatggaatttcgcaagagtctccctgcattcaaagagagggaagcattg
ttaaaggccatttcacaaaatcaggtagttgttgtctcaggtgaaactggttgtggcaaa
accacacagcttcctcagtatattttagaatctgagattgaagctgctcgtggagcttct
tgtagtattatctgtactcagcctagacgtatttctgccatgactgtttctgaaagagtt
gctgcagaacgcggagagaaactgggggagtctgttggttataaagttcggctggagggt
atgaaaggaagggatactcgtcttctcttttgcaccacgggtgtactattgagaagattg
cttgttgacagaaatttgagaggtgtatctcatgttattgttgatgagattcatgaacgt
ggaatgaatgaagattttcttgttatcgtcctgaaagatcttcttcctcgacggccggat
ttgaggttgatcttaatgagcgcaactctaaatgccgagcttttttcttcttattttggt
ggtgctccaacaatgcatatccctggttttacatacccagttcgtgcacacttcttggag
aatattcttgagattactggctatcgattaactccatataatcaaattgacgattatggt
caagaaaaggcatggaaaatgcaaaaacaagctcaagctctaaagaaaaggaagacccag
attgcttcatctgtggaggatgcatttgaggctgctaacttttcagcatacagtcctcgg
actcgggagtctctgtcctgttggaatcctgattcaattggtttcaacctcattgagcat
gtcctctcctacattgttcagaaggagaggccaggtgctatattagtttttatgaccggt
tgggacgatataaactctttaaaggaccagctccagtctcaccctttattaggggatcct
agcagagtcttgctccttgcatgccatggttcgatggccagctctgagcagagattgata
tttgataaacctgaagaaggagttaggaaaatagttctagctacgaacatggcagagact
agtatcaccatcaatgatgtggtttttgttgttgactgtggaaaagcaaaggagacatcc
tatgatgccctaaataacactccttgtttgcttccatcctggatctccaaggctgctgca
cgacaaagaagaggtagggctggtcgtgtccaacctggcgagtgttaccatctctatccc
agatgcgtatatgatgcttttactgattatcaactgccagaacttttaaggaccccattg
cagtcgttgtgtttgcaaatcaagagtctgcaacttggaagtatatcagagttcctatca
aatgcattgcagccgccagagcctttatcagttcaaaatgccatagattatttgaagaca
attggagctctggataagaaagaaaatctgacagttcttgggaaacacttgtctgttctt
ccagttgagcctaaactagggaaaatgcttatattaggagctattttcaactgtcttgac
ccaattatgactattgttgctggtcttagtgtcagagatcctttccttatgccatctgat
aaaaaggatttagccgaatcagcaaaagcacactttgctgcacgtgactgcagtgatcat
cttgccttagttcgagcttatcagggttggagagatgctgaaaaacagcaatccggttat
gagtactgttggagaaactttctctctatgcaaactcttagagccatcgactctctgagg
aagcagttcttctttttgctgaaggactctggtctagttgattacgattcagaaaaatgt
aacaactcaaactacgacgagcacttaatccgtgcaatcatctgtgctggtttgtttccc
ggaatttgctctgttgtgaacaaagagaaatcagtagctttaaagacaatggaagatggt
caggttatgctatactcgaactcagttaatgctggctatccaaaaattccctacccttgg
ctggtgtttaatgaaaaggtgaaagtaaattcagtctttcttcgggattctactggggta
tctgactctatcctgcttttatttggaggaaatatttctagaggaggacttgatggtcac
ctcaaaatgctggatggttatttggaatttttcatgaaacctgcattggccgagacttat
ttgagccttaaaggggagcttgatgagcttgttcatcaaaaacttttgaatccgaagttg
gctatggagccacacaatgagctactctcagcgttaaggttgttgatttcagaggatcgc
tgtgagggtcggtttgtctttggtcgacatatgcccgttccatcaaaaaaagcaataact
gacagtccacctcgacagaaacatggtgatggaggtgggggtgataattccaagggtcag
cttcagaccctacttgtgagagctggacatgaaacaccaacttacaaaactaagcaatta
aaaaacaatcagttccgctccactgttattttcaacggattgaactttgtgggccaacct
tgtggcagcaagaaacttgcggaaaaagatgcagctgctgaggctcttctatggctacag
ggtgagacacattcatcttcccaagctatcgatcacgcttccatacttctaaaaaagagc
aaaaagaaaaatactaagccgtcatttcatggtgccaaatggagttga
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