KEGG   Cucumis melo (muskmelon): 103494906
Entry
103494906         CDS       T03195                                 
Name
(RefSeq) sm-like protein LSM5 isoform X2
  KO
K12624  U6 snRNA-associated Sm-like protein LSm5
Organism
cmo  Cucumis melo (muskmelon)
Pathway
cmo03018  RNA degradation
cmo03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cmo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    103494906
  09123 Folding, sorting and degradation
   03018 RNA degradation
    103494906
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cmo03019]
    103494906
   03041 Spliceosome [BR:cmo03041]
    103494906
Messenger RNA biogenesis [BR:cmo03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     103494906
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     103494906
Spliceosome [BR:cmo03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    103494906
SSDB
Motif
Pfam: LSM DUF7452 Ntox4
Other DBs
NCBI-GeneID: 103494906
NCBI-ProteinID: XP_008454507
UniProt: A0A1S3BZJ2 A0A9I9DGP5
LinkDB
Position
4:11493181..11501344
AA seq 87 aa
MATNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR
RITKLDQILLNGNNIAILVPGGSPDPE
NT seq 264 nt   +upstreamnt  +downstreamnt
atggctaccaatccttcacagttactaccgtcggagttaatcgaccgatgtattgggtct
aaaatatgggtaattatgaagggcgacaaagagctcgttggcactctcagaggatttgat
gtttatgttaacatggttcttgaagatgttactgaatatgagatcacagctgaggggagg
cggataacaaagctggatcagattctactcaatgggaacaacattgctattcttgttccc
ggtggatcgcctgacccagaatag

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