Cucumis melo (muskmelon): 103494906
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Entry
103494906 CDS
T03195
Name
(RefSeq) sm-like protein LSM5 isoform X2
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
cmo
Cucumis melo (muskmelon)
Pathway
cmo03018
RNA degradation
cmo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cmo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103494906
09123 Folding, sorting and degradation
03018 RNA degradation
103494906
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmo03019
]
103494906
03041 Spliceosome [BR:
cmo03041
]
103494906
Messenger RNA biogenesis [BR:
cmo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103494906
mRNA degradation factors
5'-3' decay
Lsm complex
103494906
Spliceosome [BR:
cmo03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
103494906
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF7452
Ntox4
Motif
Other DBs
NCBI-GeneID:
103494906
NCBI-ProteinID:
XP_008454507
UniProt:
A0A1S3BZJ2
A0A9I9DGP5
LinkDB
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Position
4:11493181..11501344
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AA seq
87 aa
AA seq
DB search
MATNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR
RITKLDQILLNGNNIAILVPGGSPDPE
NT seq
264 nt
NT seq
+upstream
nt +downstream
nt
atggctaccaatccttcacagttactaccgtcggagttaatcgaccgatgtattgggtct
aaaatatgggtaattatgaagggcgacaaagagctcgttggcactctcagaggatttgat
gtttatgttaacatggttcttgaagatgttactgaatatgagatcacagctgaggggagg
cggataacaaagctggatcagattctactcaatgggaacaacattgctattcttgttccc
ggtggatcgcctgacccagaatag
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