Cucumis melo (muskmelon): 103495154
Help
Entry
103495154 CDS
T03195
Name
(RefSeq) SNF2 domain-containing protein CLASSY 1-like isoform X1
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
cmo
Cucumis melo (muskmelon)
Pathway
cmo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cmo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
103495154
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cmo03400
]
103495154
DNA repair and recombination proteins [BR:
cmo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
103495154
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
SAWADEE
Motif
Other DBs
NCBI-GeneID:
103495154
NCBI-ProteinID:
XP_008454843
UniProt:
A0A1S3BZ26
LinkDB
All DBs
Position
10:16477017..16484546
Genome browser
AA seq
1263 aa
AA seq
DB search
MVKTKRRVYEFKHPFNDYPFEAMCCGSWQAVEKIRIRNGLITLHLVNDQFMVLERGPYSD
FRVRSRQATSSDCTCFLRPGVDVCVLSSSHNMENLDMQGPQPVWIDAKISSIERRPHQAG
CSCQFYVQLYADSKPLGSEKGSLCKEIVEMGIDQISILQRVRKNFCEGQYYRWDCSEDSS
LLPKTKLLLGKFLSDLSWLIVTSALKHVTFDVRSLDNKILYQVLESNQKSTSVTSEKILH
TVNFRDDDGMLIPIIHQLDTSDNIEIPPAEHAFDNRLHSFTDPVDLRRSKRRNVQPDRFL
GCDSLDESEIDYSGTRIYKNDQLNDDEMTLPLACLFGTPVSSSKLKIENESNHHSNKVSV
HDDLSVFKNRIKSLEMKSGMSDEVEDKNQLAIVPLLDEQPIASDPYPNVANSCGNYTKQI
TEMSATYYYINNKSKIRKRKFSDFQDVDFENDIDSCRAKTSSSKGRRPSYHSISYKEDGH
PKERQWQKRSLSAGAYKDLINSFLKNIDSTIKKEEPQIIDQWKEFKNKSCLDKKIEMEMP
SNEKEEESSEIEMLWREMEISLASSYLIDANQGFSNGTSVEPEQKPSKWCKHEFKLNEEI
GMLCHICGFVSTEIKDVSAPFMQHMSWSTEERRIEEKDTEHNSDEEEEMNIFSGLPSSDD
TLSEENDNVWALIPEFRNKLHIHQKKAFEFLWKNIAGSMVPALMDQATRKIGGCVISHTP
GAGKTFLIISFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWEVPVPIHLIHGRRTYRV
FRANSKPVTFAGPRPTDDVMHILDCLEKIKKWHAHPSVLVMGYTSFLTLMREDAKFAHRK
YMAKVLRQSPGILILDEGHNPRSTKSRLRKVLMKVETDLRILLSGTLFQNNFCEYFNTLC
LARPKFVNEVLKKLDPKFKRKKKKAPHLQEARARKFFLDKIARKIDAGDEEDRRDGLNML
RNMTGGFIDVYEGGSKDGLPGLQIYTLLMNTTDIQQEILNKLHKIMAQFPGYPLELELLI
TLGSIHPWLVKTAVCANKFFTDREMMELDRYKFDLRKGSKVMFVLNLVYRVVKKEKILIF
CHNIAPVRLFVELFENVFRWKRGREILALTGDLELFERGKVMDKFEDPVGPSKVLLASIT
ACAEGISLTAASRVILLDSEWNPSKTKQAIARAFRPGQLKVVYVYQLLVTGTLEEDKYKR
TTWKEWVSSMIFSEAFVEDPSKWQAEKIEDDVLREMVEEDRVKSFHMIMKNEKASTVIRE
LKD
NT seq
3792 nt
NT seq
+upstream
nt +downstream
nt
atggttaaaactaaaaggcgtgtatatgaattcaagcatccgttcaatgattatccattc
gaggcaatgtgctgcgggtcttggcaagctgtggagaaaataagaattcgtaatggtttg
ataacccttcatttagtgaatgatcagtttatggttttggaaagaggcccctactcggat
tttcgagttaggtcgagacaggcaacctcatccgactgcacctgttttctacgaccgggt
gttgatgtttgtgttctctcttcctctcacaacatggaaaatttggacatgcaaggtcca
cagcctgtgtggatcgatgctaaaataagctcaattgaacggaggcctcatcaagctggg
tgttcatgccagttttacgtccaattgtatgctgattcaaaaccccttggttcagagaaa
ggatcactctgtaaagaaattgtagaaatgggaatagatcagatatccatactccaaagg
gttagaaagaacttctgtgaaggtcaatactaccgatgggattgctctgaggactcctct
ttgttgccaaaaacaaaactacttttgggaaaatttctttccgacctatcgtggttaata
gttacatcagcattgaaacatgtcacctttgatgtaagatcattggataacaagatcttg
tatcaagttttagagagtaaccaaaagagcacatcagtaacttctgaaaagattttacat
actgtaaactttagagatgatgatggtatgcttattccgataatacatcagctagatacc
tctgataacatcgagatacctcctgcagagcatgcatttgacaatcgacttcattccttt
actgatcctgtggacttaaggcgttcaaaacggcgtaatgttcaacctgatcgttttctt
ggctgtgatagtcttgacgaatcagaaattgactacagtggaactaggatatataaaaat
gaccaattgaatgatgatgagatgacattaccacttgcttgcctatttgggacgcctgta
agctcttcaaaactgaagattgaaaatgaaagtaaccaccattccaataaagtgagtgta
cacgatgacctctctgttttcaagaatagaataaagtctttggaaatgaaatcaggaatg
agtgatgaagtagaagataaaaatcaacttgccatagttcctttacttgatgaacagcca
atagcatctgatccatatcctaatgttgccaacagttgcggtaattatacaaaacagata
actgaaatgtcagccacatattattacattaacaacaaaagcaaaatccgaaaaagaaag
ttttcggactttcaagatgtggactttgagaatgatattgatagctgtagagcaaaaact
tcgagtagtaaaggtaggaggcccagttatcattccataagttataaagaggatgggcat
cccaaagaaagacaatggcagaaaaggtccttaagtgcaggtgcatacaaggatttgatt
aattccttcttgaagaatattgattcaacaattaaaaaagaagagccgcaaataattgat
cagtggaaagaatttaagaacaaaagctgcttggataaaaagatcgagatggaaatgccc
tctaatgagaaagaggaagaaagctctgagattgaaatgttgtggagagaaatggaaata
tcccttgcctctagttaccttattgatgccaatcagggatttagtaatggaacatcagtg
gagcctgaacagaaaccaagcaaatggtgcaagcatgagttcaaattgaatgaagagatt
gggatgctctgccatatatgtggttttgtgagcactgaaattaaagatgtatcagcacca
tttatgcaacacatgagctggagtacagaagagcggcggattgaagaaaaagatacagag
cacaacagcgacgaagaggaggagatgaatattttctctggccttccttcttctgatgat
accttgtcagaagaaaatgataatgtctgggccttgatccccgaattcagaaataaatta
catatccaccagaaaaaagcatttgagttcctgtggaaaaatattgctggttctatggtt
ccagctctcatggatcaagcaactcgtaaaataggtggttgtgtgatatcccatacacca
ggagctggaaaaacctttcttatcatctcgttccttgttagttacttgaaactgttccca
gggaaaaggccccttgtccttgctccaaagacaactctatatacgtggtacaaggagttt
atcaagtgggaggttcctgtgccaattcatctaatacatggtcgtagaacctaccgagtt
ttccgggcaaactcaaaaccagtgacctttgcaggtccaaggcctacagatgatgtcatg
cacatcttggattgcctggaaaagataaagaagtggcatgcacatccaagtgttcttgtt
atgggctatacgtcattccttacattaatgagggaagatgcaaagttcgcacacagaaag
tacatggccaaagttctgcgccaaagtcccggtatcttaatattggatgaggggcataac
cccaggagtaccaagtccaggctgaggaaagttttgatgaaagttgaaacggacctcaga
atactcctctcagggacattgtttcaaaataatttctgtgaatatttcaataccctttgc
ttggcaagacccaagtttgtgaatgaagtgttgaagaaactagatcccaaattcaagagg
aagaaaaaaaaagctccacacttgcaagaagctcgggcaaggaaattctttctagataag
atagctcggaaaattgatgcaggtgatgaagaagacaggagggatggtctgaatatgtta
agaaatatgacaggtgggtttattgatgtttacgaaggtggcagtaaggatggtcttcct
ggtttacaaatttacaccttactaatgaacacaactgacattcaacaagaaattttgaat
aaacttcacaagataatggctcaattccctggatacccccttgagttagaactcctcata
acccttggttcaatacatccttggttagtaaaaactgcagtgtgtgccaacaaatttttc
actgatagagaaatgatggagctagatagatacaaatttgatttgaggaaaggatcaaaa
gtgatgtttgttctgaatcttgtgtatcgtgtcgtcaagaaggaaaaaattttgatcttc
tgccacaacattgcacccgtcagactatttgtagagctgtttgagaatgtgtttaggtgg
aagagaggccgtgaaatcttggccctcacaggagacctcgagctgtttgaacgaggtaaa
gtgatggataagtttgaagatccagtggggccatccaaagttcttcttgcttcaatcact
gcttgtgcagaaggcataagtttgacagcagcttcacgagtcatcctactagactcggag
tggaatccttcaaagacaaagcaggccattgctcgagcttttcgtcctggccagcttaaa
gtggtttatgtctatcaactactagtaactggcacactggaagaagacaagtacaagaga
actacatggaaggaatgggtgtcgagtatgattttcagtgaggcatttgtggaggatcct
tctaaatggcaagcagaaaagattgaagatgacgttttaagagagatggtggaggaagat
agagtcaaatcatttcatatgattatgaaaaacgagaaggcttctactgtgatcagggaa
ttaaaggactag
DBGET
integrated database retrieval system
