Cucumis melo (muskmelon): 103495248
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Entry
103495248 CDS
T03195
Name
(RefSeq) polyadenylate-binding protein 2
KO
K13126
polyadenylate-binding protein
Organism
cmo
Cucumis melo (muskmelon)
Pathway
cmo03015
mRNA surveillance pathway
cmo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103495248
09123 Folding, sorting and degradation
03018 RNA degradation
103495248
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmo03019
]
103495248
03041 Spliceosome [BR:
cmo03041
]
103495248
Messenger RNA biogenesis [BR:
cmo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
103495248
mRNA cycle factors
Stress granule specific factors
103495248
Spliceosome [BR:
cmo03041
]
Complex C
Other components
Complex C specific factors
103495248
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_occluded
RRM_3
RRM_RdRP1_2
RRM_Nup35
RRM_MARF1
PABC_AtC3H46
GH97_C
Motif
Other DBs
NCBI-GeneID:
103495248
NCBI-ProteinID:
XP_008454965
UniProt:
A0A1S3C0I3
LinkDB
All DBs
Position
1:complement(521178..525327)
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AA seq
649 aa
AA seq
DB search
MAQVPPQPQVPNSGADPAANGGANQHVTTSLYVGDLDVNVTDSQLYDLFNQVGQVVSVRV
CRDLTSRRSLGYGYVNYSNPVDASRALDVLNFTPLNGNPIRVMYSHRDPSVRKSGSGNIF
IKNLDKAIDHKALHDTFSAFGSILSCKVATDSSGQSKGFGFVQFDTEEAALKAIEKLNGM
LLNDKQVFVGPFLRKQERESVSEKTKFNNVFVKNLAETTSEEDLKNMFGEFGPITSVVVM
RDGEGKSKCFGFVNFENADDAARSVEALNGKKVDGKEWYVGKAQKKSEREVELKNRFEQS
VKEAADKYQGANLYVKNLDDSIDDDKLKELFTGFGTITSCKVMRDPNGISRGSGFVAFSS
PEEAARALAEMNGRMIVSKPLYVALAQRKEDRRARLQAQFSQMQPMAMASSVAPRGMPMY
PPGGPGIGQQIFYGQAPPTIISSQPGFGYQQQLMPGMRPGGGPMPNFFVPMVQQGQQGQR
SGGRRAGAIQQTQQPVPLMQQQMLPRGRVYRYPPGRGLPDLPMPGVAGGMFSVPYEMGGM
PPRDAVHPQPVPVGALASALANATPDQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQ
TEVLHLLESPEALKAKVAEAMEVLRSVAQQTGNAADQLASLSLTDNLDS
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atggctcaggttccacctcaacctcaagttcctaactccggcgccgatccggctgccaat
ggaggcgcaaatcagcatgtcaccacctccctgtatgttggggatcttgacgttaacgtc
accgattcccagctttatgatctttttaatcaggtggggcaggtggtttctgttagggtt
tgcagggatttaaccagtcgtcgatcgcttggttatggctatgtcaattacagcaaccca
gtggatgcttcaagggcattagatgtgctaaacttcacccctttgaatggaaatcctatt
agagtcatgtattctcatcgtgaccctagcgtgcggaaaagtgggtctggaaacattttt
atcaagaacttggacaaggcaattgatcacaaagccttgcatgatactttttctgcattt
ggaagtattctatcttgcaaggttgctacagattcatcaggccagtctaagggctttggt
tttgtgcaatttgacaccgaggaagctgccttaaaagctatagaaaagttgaatggtatg
ctgctaaatgacaagcaggtgtttgtgggacctttccttcgcaagcaagaaagagaaagt
gtcagcgagaaaacaaaattcaataacgtttttgtcaaaaatctagcagaaactacctct
gaagaagatttgaaaaatatgtttggggagttcggaccaatcaccagtgttgtggtgatg
agggatggagaaggaaaatcaaaatgctttggctttgtaaattttgagaatgcggatgat
gccgccagatctgttgaagcacttaatggaaagaaggttgatgggaaagagtggtacgtt
ggaaaagcccagaagaaatctgaaagagaagttgaactgaaaaatcgatttgaacagagt
gtaaaagaagccgctgacaagtatcaaggggcaaacttatatgttaagaatttagatgat
agcatcgatgatgacaaactaaaggagttattcactggttttggaaccattacctcatgc
aaggttatgcgtgaccccaatggaatcagtagaggatctggctttgttgcattctcttct
cctgaagaggctgcaagagctcttgctgagatgaatggaagaatgattgtgagcaaacct
ctttatgttgcacttgcacagaggaaggaagatagaagagctaggttgcaagcacagttt
tcccaaatgcagccaatggcgatggcatcttcagttgctcctcgtggcatgccaatgtat
cctccaggtggtccaggtatcggacaacaaatattctatggacaagctccacctactatt
atttcctcacagcctggctttggttatcaacagcaactcatgcctggaatgaggcctggt
ggaggtcccatgccaaatttctttgtgccgatggttcagcagggccagcaagggcaaaga
tcaggtggcagacgtgctggtgccattcagcaaacccagcagcctgttcctttgatgcag
cagcagatgctacctagaggacgcgtctaccgttatcctcctggacgtggactgcctgat
cttcccatgcctggtgttgctggaggaatgttctctgttccatatgagatgggtggaatg
ccaccacgtgatgctgttcaccctcaaccagttcctgtgggtgctttggcttctgctctt
gcaaatgcaactccagaccagcagagaacgatgctgggggagaacctttatccacttgtt
gaacagctagaacctgataatgcggccaaggtaacaggaatgctattggaaatggaccaa
actgaggttctacatttgcttgagtcgcccgaagctctgaaagcgaaggtggcagaagca
atggaggttttaagaagtgtcgctcagcagaccggcaatgcagctgatcaattggcttca
ctatccttgactgacaatcttgattcttaa
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