Cucumis melo (muskmelon): 103495752
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Entry
103495752 CDS
T03195
Name
(RefSeq) ATP-dependent RNA helicase DEAH12, chloroplastic-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
cmo
Cucumis melo (muskmelon)
Pathway
cmo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cmo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103495752
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cmo03041
]
103495752
Enzymes [BR:
cmo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103495752
Spliceosome [BR:
cmo03041
]
Complex C
Other components
Step II factors
103495752
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RBD_DEAH11
RRM_DEAH11
KH_DEAH11
KH_DEAH11_2nd
KH_DEAH11_1st
Helicase_C
IBR
OB_NTP_bind
DEAD
AAA_22
IBR_1
AAA_19
Arc_MA
ABC_tran
nSTAND3
Helicase_RecD
T2SSE
ResIII
AAA_29
HA2_N
IBR_2
Motif
Other DBs
NCBI-GeneID:
103495752
NCBI-ProteinID:
XP_008455623
UniProt:
A0A1S3C1B4
LinkDB
All DBs
Position
7:15245562..15252349
Genome browser
AA seq
1734 aa
AA seq
DB search
MKSSSSTASRPPDSSFRCNRPSNLHFLPRSPNASDLPSKFSAQQNCPNRANFAIDLVLEH
RTLSKCSVELLIAKCISKPDNFIIPQAGSVSAFLFFKQWVSALESMVGLWELRLNGFHDF
TPILKPRINLPSDVDELHGRLRNLFAERIKRLMDGDKVRHWQNKYDLVLVQIDRISDILR
RPLRTDAAFELNEKKKGLLVEKESIMRKMEEFNSAMHHILDHVEGKKVETSDSLDMGIFT
FDGTINWNRIHSLILRECRRLEDGLPMYSCRQEILRQIQYQQVMVLIGETGSGKSTQLVQ
FLADSGLSGSKSIVCTQPRKISAVLLAHRVREESRGCYYDDDYISCYPSFSSAQQFKSKI
IYMTDHCLLQHYMNDKKLSDVSCIIIDEAHERSLNTDLLLALLKSLLMVRIDLHLIIMSA
TANADQLSKYFFRCGIFRVPGRSFPVDIKYVPSSNEGTSGSCIVPSYVTDVVQMASEIHW
QEKGGAILAFLTSQMEVEWACENFHAPGTVPLAFHGKLSFDEQFRVFQDHPGKRKVIFAT
NLAETSLTIPGVKYVIDPGWVKDSKFEPGSGMNILKVCRTSQSSANQRAGRAGRTEPGRC
YRLYTESEFELMSPNHEPEIRKVHLGVAILRILALGVKNVDDFDFVDAPSAEAVDMAIRN
LIQLGAITLNNKVYELTNEGSNLVKLGIEPRLGKLILSCFDCRVRREGVVLAVLMTNASS
IFCRVGRVEDKLKSDCQKVQFCHPDGDLFTLLSVYKQYEALPKERKNRWCWENSINAKTM
RRCQDAILELERCLKQELHIIIPSYWLWSPLKPSDHDRNIKKCILGSLAENVAMFTGYDR
LGYEVAMTGQHVQLHPSCSLLIFSERPKWVVFSEILSIVNEYLICVTAFDVDALLTLSPP
PLFDISNMEKHRLEGRVLSGFGKTVLKRVCGKSNSNLLSLTSHVRKVFSDNCIGIEVNIN
QNEVMLFSRTENMDEVCHFVNDVLEYERKYLLNECMEKCLYHGNGGSTPVALLGAGAKIR
HLELEKRYLTVYAFRLNVDSIDDKEFFTSLENFVSGTICSIQKVPNSGLDVDDRGRGYRI
TFLTPDAAEKASKIDCDSFCGSLMKIIPSQLTAGCDNKMFTFPPVKAKVFWPRRLSKGFA
VVKCNINDVGFILNDFSSLLIGGRFLRCEPSIKYNDCVTISGIDKELSEADILNVLRTAT
DRKILDLFLVRENAVDNPPVNSCEESLLKEISPFMPKSNPHVKCCRVQVFPPQPKDFYMK
AAITFDGRLHLEAAKALEFLEGKALPVCLPWQKIKCQQLFHSTLSCTIPIYRVIKHQLNS
LLESFRRIDGVECTLSQNVNGSYRVKLSANATKTVAELRRPVEELLRGKIIDDASLTPTV
VQHLTSRDGFDLINLLQRENGVYILFDRQRLGLRIFGASENIAAAEQKLIQSLRLIHESK
QLEIHLRGKSWPSNLLKAVVEKFGPDLNGLKQKFPGAGFTLNTRRHILYVQGSKDLKQEV
ETIVFELAAMSGGSGERPDDADCCPICLCDIEDDRFELEACGDHFCRQCLVEQFESAIKN
QGRFPVCCAKQKCGTPIVLADMRTLLSSEKLEELFRASLGAFIASSDGAYRFCPSPDCPS
VYRVARPNMPGEPFMCEACYSETCNRCHLEYHPFLSCEQYRVFKEDPDSSLKEWRKGKEN
VKNCPVCGYTIEKTEGCNHVECRCGRHICWVCLEYFGSSDECYAHLGSVHMTIV
NT seq
5205 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcttcttcttccaccgcctcccgcccaccggattcttccttccgatgcaatcga
ccttccaacttacacttcctgccgcgttctcccaatgcctccgacttgccttctaagttt
tccgcccaacaaaattgcccaaaccgcgccaatttcgctattgaccttgtcttggagcat
cgcaccctttccaagtgttctgttgagcttttaatcgctaaatgtatctccaagccggat
aattttattatccctcaggctggttctgtttctgcctttttgtttttcaagcagtgggtt
tctgcgctcgagtctatggttggcctctgggaactgcgcctcaatggctttcatgatttc
actcctattctcaaacctaggatcaatttgccctctgatgttgacgaactccacggacgt
cttcggaacctctttgctgaacgtatcaagcgtctcatggatggcgacaaggtccgacat
tggcaaaacaaatacgatcttgttttggttcagattgatcggatttctgatatacttcgg
aggccccttcgtacagacgctgcttttgaactcaatgaaaagaagaaggggcttcttgtt
gagaaggaatcaattatgaggaagatggaagagtttaactctgccatgcatcacattctg
gatcatgtggaaggaaagaaagtggaaacatcagatagccttgacatggggatttttaca
tttgatgggacaattaactggaaccggattcatagcttgattttgagagaatgccgcaga
cttgaggatggtttgcccatgtattcatgccgccaggaaatacttcggcaaattcagtat
caacaggtaatggtattgattggagagactggttcaggaaagagcacacaattggttcaa
tttctggctgattcgggactttctggttctaagtcaattgtgtgtacacagcctcgcaag
atatctgctgtcttgcttgctcatcgggtgagggaagaaagccgtgggtgttattacgat
gatgattatattagctgttatccatccttttcgtctgctcaacagttcaaatcaaagata
atatacatgaccgaccactgtttactgcagcactacatgaatgataagaagctttctgat
gtttcctgcattataattgatgaggctcacgaaagaagtttgaatactgatctccttttg
gccttactcaagagtttactcatggtgagaattgacttgcatcttattattatgtctgca
acagccaatgcagaccaactatcaaagtacttttttaggtgtggcatctttcgtgttcct
gggaggagctttcctgttgatattaaatatgttccttcttccaatgaaggcacttctggt
tcttgcatcgttccttcatatgttactgatgtcgtacaaatggcatctgagattcactgg
caagaaaaaggaggggctattcttgcatttttgacttctcagatggaagtagaatgggca
tgtgaaaattttcatgctcctggtacggttcccctggcatttcatggtaagctctccttt
gatgagcaatttcgtgttttccaggaccatcctggaaagagaaaggttatttttgccacg
aatcttgcagagacatcattgacaattcctggtgtcaagtatgttatagatcctggttgg
gtcaaagatagcaaatttgaacctggaagtggtatgaatattcttaaggtctgcagaacc
agccaaagttctgcaaatcaacgagctggtcgtgctggtagaacagaacctggaaggtgt
tatagactgtacacagagtcggagtttgagctaatgtctccaaatcatgaacctgagatt
cgtaaggttcacctgggtgttgcaattttaagaattcttgccttgggtgtaaagaatgtg
gatgattttgactttgtggatgctcctagtgctgaagctgttgacatggccatcagaaat
ctcatccaattgggagctattacactgaataataaagtttatgaattaacaaatgaaggt
agtaatttagtaaagttgggcattgagccacgccttggcaagttgattcttagttgcttt
gattgtcgtgttcgtagagagggtgttgtacttgctgttttaatgacaaatgctagtagt
atattttgccgagttggtagagttgaagataaattaaaatctgattgccagaaagttcag
ttttgccaccctgatggtgaccttttcacgctgctctcggtttataaacaatatgaagcc
ttgcctaaggagaggaaaaacagatggtgttgggagaacagcattaatgccaaaactatg
agaagatgccaagatgctatcttggaattggaacgttgtctcaaacaagaacttcacatt
attattccaagttattggctttggagtccgctaaagccttcagatcatgacagaaatatt
aagaaatgcatacttggttctcttgctgagaatgtggccatgttcactggttatgatcga
ctgggttatgaagtggcaatgactggacagcatgttcagctacatccgtcatgttctttg
ctaatatttagtgaaaggccaaaatgggtggtgttcagtgaaattttgtcaatagttaat
gaatatttgatctgtgtaactgcttttgacgtagatgctttattgaccctttcccctcct
cctttgtttgacatatctaacatggagaaacataggcttgaaggacgagttcttagcggc
tttggcaaaactgtacttaaaagagtttgtgggaaaagcaacagtaatcttctttctctt
acatcacatgttcgaaaagtattcagtgataactgcataggcattgaagtgaatatcaat
cagaatgaggttatgttgttttcgagaacagagaacatggatgaggtatgtcattttgta
aatgacgttttggagtatgaaaggaagtatttgttgaatgaatgcatggagaaatgcttg
tatcatggaaatggtggctcaactccagttgctttgttgggtgctggtgctaaaataaga
catctggagcttgagaagagatatttgacagtttatgcatttcgtttgaatgtggacagc
attgatgataaggagttctttacgtctcttgaaaattttgtatctggtacaatttgtagt
attcaaaaagttccaaattctggactggatgttgatgacagaggaagaggatatagaata
acgttccttactcctgacgcagctgaaaaagcttccaagattgattgtgattccttttgt
ggatccttgatgaagataattccttcacagttaactgctggatgtgataataagatgttc
actttccctcctgtaaaagctaaagtattctggcctcgtaggttgagcaaaggatttgca
gttgttaaatgtaacattaatgatgtgggtttcattcttaatgatttctctagcctactg
attggaggtaggttcttacgatgtgaacctagcatcaagtacaatgactgtgttactatt
agtggaatcgacaaagagctttctgaagctgatattttaaatgttctgagaactgcaaca
gacaggaaaattttggatctttttctggttcgggaaaatgctgttgacaaccctccagtt
aattcttgtgaagagtccctgctgaaagaaatttctccttttatgcctaaatcaaaccct
catgtcaaatgttgtcgtgttcaagtttttccacctcaaccaaaggatttttacatgaaa
gctgcaataacttttgatggaagattgcacttggaggcagcaaaagctttggagtttttg
gaaggaaaagcactgcctgtatgtcttccatggcagaaaataaagtgccagcagctattt
catagcactttatcctgcaccattcccatatatagagtgataaaacatcaactgaattcc
ttgcttgaaagcttcaggaggatagatggtgtagaatgcactctttctcaaaacgtcaat
ggttcttaccgagtgaagctatctgccaatgccacaaaaacagttgctgagcttagacga
cccgtggaagagcttctgagagggaagattatagatgacgctagcctgactccaactgtt
gtgcagcacctgacctctagagatggttttgatttaataaatcttctacaaagggaaaat
ggagtctacatcctctttgacaggcagagacttggtctgcggatttttggtgcttctgag
aacatagctgctgctgagcagaagttgattcaatccctccggttaattcatgaaagcaaa
caactcgagattcaccttcgaggcaaatcttggccttccaacctcttgaaggcagtggtt
gagaagtttggcccagatctcaacggccttaaacaaaagtttccaggggctggatttaca
ttaaatactcggcgtcatatcttatatgtccagggtagtaaggatttgaagcaggaagtt
gaaaccatcgtttttgagcttgcagcgatgagtggtggttcaggcgagaggcctgatgat
gcagattgttgtccaatctgcttgtgtgacattgaagacgacaggtttgagcttgaagcc
tgtggagaccatttttgccgacaatgccttgtggagcagttcgagtctgccataaaaaat
cagggacgattcccagtatgttgtgctaaacagaaatgtgggacacctattgtacttgca
gatatgagaactctgttgtcaagcgagaagttagaggaattgttccgagcttcgttggga
gcttttattgcgtctagtgatggtgcctataggttttgcccgtctcctgactgtccctca
gtttaccgagtggccaggcccaatatgcccggggaaccattcatgtgtgaagcatgctac
tcagaaacttgtaataggtgccatttggagtatcatcctttcctgtcgtgcgaacagtac
cgtgtgtttaaggaagacccagattcatcactgaaagagtggcggaaaggtaaagagaat
gtaaagaactgccccgtgtgcggttacacgattgagaagactgaagggtgcaaccacgtt
gaatgcaggtgtggaaggcatatttgttgggtttgtttggagtattttggcagcagtgat
gaatgctacgcccatttggggagcgttcacatgaccatcgtttga
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integrated database retrieval system
