Cucumis melo (muskmelon): 103496353
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Entry
103496353 CDS
T03195
Name
(RefSeq) E3 ubiquitin-protein ligase COP1 isoform X1
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
cmo
Cucumis melo (muskmelon)
Pathway
cmo04120
Ubiquitin mediated proteolysis
cmo04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
cmo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
103496353
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
103496353
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cmo04121
]
103496353
Enzymes [BR:
cmo01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
103496353
Ubiquitin system [BR:
cmo04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
103496353
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
103496353
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WDR55
Beta-prop_RIG_2nd
EIF3I
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Beta-prop_DCAF4
WD40_MABP1-WDR62_2nd
zf-C3HC4_2
Beta-prop_HPS5
WD40_MABP1-WDR62_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
zf-C3HC4
WD40_RFWD3
Beta-prop_TEP1_C
WD40_like
Beta-prop_CAF1B_HIR1
zf-C3HC4_3
zf-RING_2
Beta-prop_DCAF12
U-box
Beta-prop_WDR75_1st
zf-RING_UBOX
Beta-prop_WDR35_TULP_N
Beta-prop_IFT140_1st
Beta-prop_SCAP
Beta-prop_NUP159_NUP214
zf-C3HC4_4
zf-RING_5
WDR90_beta-prop_4th
DUF1664
zf-RING_6
Cep57_CLD_2
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
103496353
NCBI-ProteinID:
XP_008456402
UniProt:
A0A1S3C4F2
LinkDB
All DBs
Position
11:23030868..23041320
Genome browser
AA seq
675 aa
AA seq
DB search
MDDGSTGALVPAVKTEPVSSSVSAPSIPDCSLAELDTVVEASAQLDKDFLCPICMQIIRD
AFLTACGHSFCYMCIITHLRNKSDCPCCAQHLTSDQLFPNFLLDKLLKKTSAHQIAKTAT
PIELFRHALQEGCNVSIKELDSLLAMLSEKKRKMEQEESVRNMKILTDFLHCLRKQKVSE
LNEVQTDLQFIKEDISTVERHRMELSRARDRYSMKLRKAGDDMKAREPWLTLMDKRNDGP
TSTSLNTWGVVSAGNFQNKKADSRSQVSTYGLYKKDSLNGAEPQVNHTGLSVARKKRVHA
QFNDLQECYLQKRRQLPNQLLDQQEKDKNVMHREGYNPGLSDFQSVLTTFTQYSRLRVIA
ELRHGDLFHTTNIVSSIEFDRDDELFATAGVSRCIKVFDFSSVVNEPPDAHCPIVEMSTR
AKLSCLSWDKQSKNIIASSDYEGIVTVWDVNRGQSVMEYEEHEKRAWSVDFSRTEPSRLV
SGSDDCKVKVWCMKQEASVLDIDMKANICCVKFNPGSGNLIAVGSADHNIHYYDLRNISH
PLHVFTGHKKAVSYVKFLSNSELASASTDSTLRLWDVKENLPVRTFRGHTNEKNFVGLTV
NNEYIACGSETNEVFVYHKEISRPLTWHRFGSPDVADVEDDVGSYFISAVCWKSDSPTIL
TANSQGTIKVLVLAV
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atggacgacggatcaaccggagccttagttccggcggtgaagacggagccggtgtcttca
tccgtttctgctccgtcaattcctgattgctcacttgccgagctcgacaccgtcgtcgag
gcttcagctcagctggataaggacttcctctgcccaatttgcatgcagatcattagggat
gcgttcctcactgcctgcggtcacagtttctgttacatgtgtatcatcactcatcttcgc
aacaagagtgattgcccttgctgtgctcaacatctcacctctgaccagctgtttcctaac
tttttgcttgataagcttctgaagaagacatctgcacatcaaatcgcaaaaactgcaacc
cccattgaactttttcgtcatgctttacaagagggttgtaatgtgtcaattaaggagttg
gattccctcttggcaatgctttctgagaaaaagagaaagatggaacaagaagaatctgtt
agaaatatgaaaattttaacagatttcttgcattgcctgaggaagcaaaaagttagcgag
ctcaatgaggtgcaaactgatctccagtttattaaggaggacataagtacagtggaaaga
catcggatggagctgtctcgtgcgagggataggtactccatgaagctacgcaaggctgga
gatgatatgaaagctagagaaccttggttgacattaatggataagagaaatgatgggcct
acctcaacttctttgaatacttggggtgttgtatctgccgggaattttcaaaacaagaaa
gcagattcaaggagtcaagtcagcacttatggactctacaaaaaggattcattaaatggg
gcagaaccacaagtgaatcatactggtctatctgttgcaaggaaaaagcgtgtccatgct
cagttcaatgacctacaagaatgttatctgcaaaagcgacgtcagctgccaaaccaactg
cttgatcaacaggaaaaggataaaaatgttatgcacagagaaggatataatccaggcctt
tcagattttcaatcagtattgactaccttcacacaatacagtcgcttgagagtcattgct
gaacttagacatggggacttatttcacaccaccaacatagtatcaagcattgaatttgac
cgagatgatgagttatttgctacagctggtgtttctcgatgcataaaagtctttgacttc
tcttcggttgttaatgagcctcctgatgcccactgtcctatagtggaaatgtcaacacgt
gcaaaattaagttgcttgagttgggataaacaatcaaaaaacataatagctagcagcgac
tatgagggtatagtaacagtttgggatgtaaatagagggcagagtgtgatggagtatgaa
gagcatgaaaagcgtgcttggagtgttgatttttcccgtacagaaccgtcaaggctggtg
tccggtagtgatgattgcaaggtcaaagtttggtgcatgaaacaggaggccagtgttctt
gatatcgacatgaaagccaatatatgttgtgtcaaattcaatcctggatctggcaatctc
atagctgttggttcagcagatcacaatattcattattatgatctaagaaacatcagccat
ccacttcacgtcttcaccggtcacaagaaagctgtgtcatatgtaaaatttctatcgaac
agtgagcttgcgtctgcatctactgacagcactttacgattatgggatgtaaaggaaaat
ctaccagttcggacctttagaggccatacaaatgagaaaaactttgttggtctgaccgtg
aacaatgaatacattgcttgtggcagtgaaacaaatgaagtctttgtctaccacaaggaa
atatccagaccactgacgtggcataggttcggttcacctgatgtagctgatgtggaggat
gatgtgggatcttatttcatcagtgctgtttgctggaagagtgacagtcctactatcctc
accgctaacagtcagggaacaattaaggtgctggttcttgcggtttaa
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