Cucumis melo (muskmelon): 103497394
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Entry
103497394 CDS
T03195
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
cmo
Cucumis melo (muskmelon)
Pathway
cmo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103497394
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmo03019
]
103497394
Messenger RNA biogenesis [BR:
cmo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103497394
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
103497394
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
103497394
NCBI-ProteinID:
XP_008457784
UniProt:
A0A1S4E1U2
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Position
11:complement(2069313..2075760)
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AA seq
660 aa
AA seq
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MSGLLNSSLNGSASNLPDGTGRSFATSFSGQSGAASPVFHHSGGGLHNIHGSFSIQNMSG
ALTSRNSTINNVPSGGVQQPTGTLSSGRFASNNLPVALSQLSHGSSHGHSGVASRGGISV
VGNPGFSSSTNAVGGSIPGILSTSAAIGNRNTVPGLGVSPILGNAGPRITSSMGNMASGG
NIGRSITAGGGLSLPGLASRLNLGANSGSGSLTVQGQNRLMSGVLPQGSQQVISMLSNSY
PSAGGPLSQSHMQSVNSLNSLGMLNEVNTNDNSPFDINDFPQLTSRPSSAGGPQGQLSSL
RKQGLSPIVQQNQEFSIQNEDFPALPRFKGGNADYGMDIHQKDQHDNSVPMMQSQQFSIG
RSAGFNLGGTYSHRPQQQQQHSPAVSNSSVSFPPANNQDLLHLHGSDMFPSSHAASYHQQ
SSGPPGIGLRPLSSPSSASGMSYDQLIQQYQQHPSQSQFRLQHMSGVSQSFRDQGMKSMQ
ATQSSPDPFGLLGLLSVIRLSDPDLASLALGIDLTTLGLNLNSADNLHKTFGSPWSDEPA
KGDPDFIVPQCYLIKPPPTLHRGYFSKFTLETLFYIFFSMPKDEAQLYAANELYNRGWFY
HKEHRFWFIRVSNMEPLVKTSTYERGSYLCFDPHTFETIRKDNFVLHYEMVEKRPVLSQH
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggtttacttaattcatctcttaatggatcagcttcaaatcttccagatggtact
gggcgatcttttgctacctcattttctggtcagtctggtgcagcctcccctgtttttcat
cactccggaggagggttgcataacatccatggaagcttcagtattcaaaacatgtcaggt
gcactaacttcaagaaattcaactataaataatgttccatctggtggagtgcagcaacct
actggaacactttccagcgggcggtttgcttcgaacaacctccctgttgctctttctcag
ttgtctcatggcagctcccatgggcattcaggagtcgcaagtagaggaggtataagtgtt
gttggaaaccctggatttagtagtagcacaaatgcagttggcggttctattcctgggatt
ctatctacttctgctgctattggtaatcgaaatactgttccaggattgggtgtatcccca
attttgggaaatgcaggtcctcgaatcacaagttcaatgggaaatatggccagtggaggc
aacataggaaggagtataactgcgggtgggggattgtcattacctggtcttgcttctcgc
ctaaaccttggtgcaaatagtggatccggaagcttaactgtgcaaggacaaaaccgtcta
atgagtggtgtgcttcctcaaggatctcaacaggtcatttctatgttgagtaattcttat
cctagtgctggaggtcccctttcccaaagccacatgcagagtgtgaatagtttgaattct
ttggggatgttgaatgaagtgaacaccaatgacaattctccttttgacattaatgatttt
cctcagttaacaagtcgtccaagttcggcaggagggccccaagggcaattaagttcgctg
agaaagcagggccttagtcctatcgttcaacaaaatcaagagttcagcattcagaatgaa
gacttccctgcattacctagatttaaaggtggcaatgctgattatggcatggacattcat
cagaaagatcaacatgataattctgtgcctatgatgcagtctcagcagttctctattgga
agatctgctggatttaacctagggggcacatattcacaccgaccccagcagcagcaacaa
cattctccagctgtcagtaacagctcggtctcctttccacctgcaaataatcaggatctc
ctacatttacatggatcagatatgttcccatcttcacatgctgcatcctatcaccagcag
tctagtgggcctcctggtattgggttaagacctctgagctctcctagttcagcttctgga
atgagttatgaccaacttattcagcaatatcagcagcatcccagtcaatctcagtttcga
ttgcaacatatgtctggtgttagccagtcgtttagagatcaaggcatgaaatctatgcag
gcgactcaatcttctcctgatccattcggcttacttggcttgttaagtgtgataaggttg
agcgatcctgatcttgcatcccttgcacttggaatcgatttgaccacattaggattaaat
ttgaattcagcagataaccttcacaagacttttggctccccatggtctgatgaacctgcc
aagggcgatccggatttcattgtaccacaatgctatcttatcaaaccaccacctacacta
catagaggctacttctcaaaatttactctggagacactgttttatatatttttcagcatg
ccaaaagatgaagcccagttatacgctgcgaatgaactttataatagaggctggttttat
cacaaagaacatcggttctggttcattcgggtctcaaacatggaaccacttgtgaagact
agcacgtacgaaagaggatcatatctctgtttcgacccccacacgttcgaaactattcgc
aaggataatttcgttctccactacgagatggtagaaaagagaccagttctgtcccaacat
taa
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