Cucumis melo (muskmelon): 103497556
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Entry
103497556 CDS
T03195
Name
(RefSeq) sm-like protein LSM2 isoform X1
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
cmo
Cucumis melo (muskmelon)
Pathway
cmo03018
RNA degradation
cmo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cmo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103497556
09123 Folding, sorting and degradation
03018 RNA degradation
103497556
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmo03019
]
103497556
03041 Spliceosome [BR:
cmo03041
]
103497556
Messenger RNA biogenesis [BR:
cmo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103497556
mRNA degradation factors
5'-3' decay
Lsm complex
103497556
Spliceosome [BR:
cmo03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
103497556
Complex C
U2 snRNP components
103497556
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
DUF150_C
LSM14
Motif
Other DBs
NCBI-GeneID:
103497556
NCBI-ProteinID:
XP_008458017
UniProt:
A0A1S3C7G1
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All DBs
Position
1:25681773..25697678
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AA seq
101 aa
AA seq
DB search
MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMDLSLGW
TIDTAWHSRRLYILDDHTSSTSNLSSAFFAIFCFLPQMNSL
NT seq
306 nt
NT seq
+upstream
nt +downstream
nt
atgttatttttctcatacttcaaggatttggtgggcagagaggtgacagttgagttgaag
aacgacctagcaattcgaggaactttgcattctgtagatcagtatctcaacatcaaactg
gaaaacacgagggttgtcgatcaagaaaaataccctcacatggacttgagtttgggatgg
acgattgacactgcctggcatagcaggagactttacatccttgatgatcatacctccagt
acttcaaacctttcttcagccttcttcgccatcttttgtttcttgccccagatgaacagt
ctgtga
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