KEGG   Cucumis melo (muskmelon): 103497556
Entry
103497556         CDS       T03195                                 
Name
(RefSeq) sm-like protein LSM2 isoform X1
  KO
K12621  U6 snRNA-associated Sm-like protein LSm2
Organism
cmo  Cucumis melo (muskmelon)
Pathway
cmo03018  RNA degradation
cmo03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cmo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    103497556
  09123 Folding, sorting and degradation
   03018 RNA degradation
    103497556
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cmo03019]
    103497556
   03041 Spliceosome [BR:cmo03041]
    103497556
Messenger RNA biogenesis [BR:cmo03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     103497556
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     103497556
Spliceosome [BR:cmo03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    103497556
 Complex C
  U2 snRNP components
    103497556
SSDB
Motif
Pfam: LSM SM-ATX DUF150_C LSM14
Other DBs
NCBI-GeneID: 103497556
NCBI-ProteinID: XP_008458017
UniProt: A0A1S3C7G1
LinkDB
Position
1:25681773..25697678
AA seq 101 aa
MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMDLSLGW
TIDTAWHSRRLYILDDHTSSTSNLSSAFFAIFCFLPQMNSL
NT seq 306 nt   +upstreamnt  +downstreamnt
atgttatttttctcatacttcaaggatttggtgggcagagaggtgacagttgagttgaag
aacgacctagcaattcgaggaactttgcattctgtagatcagtatctcaacatcaaactg
gaaaacacgagggttgtcgatcaagaaaaataccctcacatggacttgagtttgggatgg
acgattgacactgcctggcatagcaggagactttacatccttgatgatcatacctccagt
acttcaaacctttcttcagccttcttcgccatcttttgtttcttgccccagatgaacagt
ctgtga

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