Cucumis melo (muskmelon): 103500181
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Entry
103500181 CDS
T03195
Name
(RefSeq) spliceosome-associated protein 130 A
KO
K12830
splicing factor 3B subunit 3
Organism
cmo
Cucumis melo (muskmelon)
Pathway
cmo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cmo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103500181
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmo03021
]
103500181
03041 Spliceosome [BR:
cmo03041
]
103500181
03036 Chromosome and associated proteins [BR:
cmo03036
]
103500181
Transcription machinery [BR:
cmo03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
103500181
Spliceosome [BR:
cmo03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
103500181
Complex B
103500181
Complex C
U2 SnRNP specific factors
103500181
Chromosome and associated proteins [BR:
cmo03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
103500181
TFTC complex
103500181
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
CPSF_A
Beta-prop_RSE1_2nd
Beta-prop_BBS7
WDR55
Motif
Other DBs
NCBI-GeneID:
103500181
NCBI-ProteinID:
XP_008461619
UniProt:
A0A1S3CFL5
A0A9I9DU50
LinkDB
All DBs
Position
10:complement(5856694..5861885)
Genome browser
AA seq
1214 aa
AA seq
DB search
MYLYSLTLQRATGIVSAINGNFSGGKTQEIVVARGKVLDLIRPDDSGKIQTLLSVEIFGA
IRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNKDKNVFDKIHQETFGKSGCRRIVPGQYL
AIDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGIDCGFDNPI
FAAIELDYSEADQDSTGMAASEAQKHLTFYELDLGLNHVSRKWSEPVDNGANMLVTVPGG
GDGPSGVLVCAENFVIYKNQGHPDVRAVIPRRADLPAERGVLIVSAAMHKQKTMFFFLLQ
TEYGDIFKVTLEHNNDSVKELKIKYFDTIPVTASMCVLKSGFLFAASEFGNHSLYQFQAI
GEDADVESSSATLMETEEGFQPVFFQPRRLKNLMRIDQVESLMPIMDMKIINLFEEETPQ
IFTLCGRGPRSSLRILRPGLAISEMAVSELPGVPSAVWTVKKNINDEFDAYIVVSFANAT
LVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPNGIRHIREDGRINEWRTPGKR
TIVKVGSNRLQVVIALSGGELIYFEVDMTGQLMEVEKHEMSGDVACLDIAPVPEGRQRSR
FLAVGSYDNTIRILSLDPDDCMQILSVQSVSAAPESLLFLEVLASVGGEDGADHPASLFL
NAALHSGVLFRTVVDMVTGQLSDSRSRFLGLRAPKLFSVVLRGRRAILCLSSRPWLGYIH
QGHFLLTPLSYETLEYASSFSSDQCAEGVVAVAGNFLRVFTIERLGETFNETVIPLRYTP
RKFVLQPRRKLLVVIESDQGAFTAEEREAARKECFEAAGAGENGNGTMEQMENGGDDEDK
DDPLSDEHYGYPKAESEKWVSCIRVLDPRSATTTCLLELQDNEAAFSVCTVNFHDKEYGT
LLAVGTAKGLQFFPKRSLVAGYIHIYRFLEDGKSLELLHKTQVEGVPLALAQFQGRLLAG
IGNVLRLYDLGKRRLLRKCENKLFPNTIVSIQTYRDRIYVGDIQESFHYCKYRRDENQLY
IFADDSVPRWLTASYHVDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKL
NGAPNKVEEIIQFHIGDVVTSLQKASLIPGGGECILYGTVMGSLGALHAFTSRDDVDFFS
HLEMHMRQEHPPLCGRDHMGYRSAYFPVKDVIDGDLCEQFPSLPLDMQRKIADELDRTPG
EILKKLEEVRNKII
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atgtacctttacagtctcactttgcaacgagctaccgggattgtctcggctataaatgga
aatttctccggtggtaaaacgcaggagatagttgttgccagagggaaggtcctggatctc
attcgtcccgatgatagtggtaagatccaaactcttctttctgttgaaatctttggtgcg
attcggtctttagctcaatttaggcttactgggtctcaaaaagattatattgtcgttggg
tctgattcgggtcgaattgttattctggagtataataaggataagaatgtatttgacaag
atacatcaggagacttttgggaagtcgggttgtcgtcgtattgttccagggcaatatttg
gctattgaccctaaaggaagggctgttatgattggggcatgtgagaagcagaagcttgtt
tatgttttgaacagagatacagcagccaggcttactatttcttcaccattggaggctcat
aagtcgcataccatagtatattcaatttgtggaattgactgtggatttgacaatcctata
tttgctgcaattgagttggactactcggaggcagatcaggattctactgggatggcagca
agtgaagcccagaagcatttaactttttatgaacttgatcttggtctcaatcatgtctcc
cggaagtggtcagaacctgttgataatggtgccaatatgcttgttactgttcctggaggt
ggggatggtcctagtggagtgttagtttgtgctgaaaattttgtgatttataagaaccag
ggacatccagatgttagagctgtcattcctagacgtgcagatttacctgctgaacgtggt
gtgcttatagtttcagcagcaatgcataagcaaaaaacaatgtttttctttcttttacag
acagagtatggagatatatttaaggttaccttggaacacaacaacgacagtgtcaaagaa
ctgaagataaagtattttgatacaattccagttacagcttcaatgtgcgttctgaaatca
ggatttctatttgctgcctcagaatttggaaatcactcactctaccagttccaagccata
ggggaggatgctgatgttgagtcttcctcagctactctgatggaaactgaagaaggtttt
cagcctgtttttttccagcctaggagacttaaaaaccttatgagaattgatcaagttgag
agcttaatgcctataatggatatgaaaatcataaatctttttgaggaggaaacacctcag
atttttactctttgtgggcgtggtcctcgatcatctttgcgaatattgagacctggcttg
gccatcagtgaaatggctgtgtcagaacttcctggtgttcctagtgctgtttggactgtg
aaaaagaacatcaatgatgagtttgatgcatacattgttgtgtcatttgcaaatgcaaca
cttgttctttctattggtgagactgttgaagaagttagtgatagtgggttccttgacact
accccttcccttgctgtttctttgataggtgacgattctctcatgcaagtccatccaaat
ggtattaggcatattagggaagatgggcgtattaatgaatggagaactccaggcaagagg
accattgttaaggttggttctaataggcttcaagtggtgattgccctaagtgggggagaa
cttatttattttgaggtggacatgactggtcagttaatggaggtggagaagcatgaaatg
tctggagatgtggcttgcttggacattgccccagtacctgaaggaaggcaacgttcgcgt
ttcctagcagttggttcttatgataacacaatacgaattctatcattggatcctgatgac
tgtatgcaaattttaagtgtgcaaagtgtttctgcagctccagaatctcttctgtttcta
gaagttttggcatcagtaggtggggaggatggtgcagaccatcctgctagccttttcctg
aatgctgcattgcattctggggtgttattcagaacagtcgtggatatggtgacaggccag
ctttctgattcccgatcccgtttcttaggactaagagcacccaaactattttctgttgtt
ttaagggggaggcgtgcaattctttgcctgtcaagtagaccttggcttggatatattcat
caaggccattttctattgacccctctatcatatgaaactcttgaatatgcctcatcattt
tcatcagatcagtgtgcagagggtgtagttgctgtggctggaaatttcttgagggttttt
accattgagagattgggagaaacatttaatgaaacggtcattccacttaggtacacccca
agaaagtttgtgcttcaacctaggagaaaattattggttgttattgagagtgatcaggga
gcattcactgcagaagagcgagaagctgctagaaaggaatgctttgaggctgcaggggct
ggggaaaatggaaatggcacaatggagcaaatggagaatggtggagatgatgaggataag
gatgatcctctatctgatgagcattatggttatccaaaggcagagtctgaaaaatgggtt
tcatgcatccgagttcttgatcctaggtcagccactacaacttgtctgctggagcttcag
gacaatgaagcggcatttagtgtgtgtactgtcaatttccatgacaaggagtatggaacc
cttttagccgttggtactgcaaaggggctgcagtttttccctaaacggagtttagttgct
ggatatattcatatttatcgttttctggaagatggaaaatcccttgaacttttgcacaag
acacaagtggaaggtgttcctcttgctttagctcagttccagggaagattacttgcagga
ataggaaatgtgcttagattatatgatttggggaaaagaagactgcttaggaaatgtgaa
aataagttgttcccgaatacaattgtgtctattcagacatatcgtgatcgaatttatgtt
ggtgacattcaagagtcattccattattgcaagtataggcgggatgaaaatcaactatat
atatttgctgatgactctgttcctagatggcttacagcatcatatcatgtggactttgac
accatggctggtgctgataagtttggaaatatctattttgtgcggctaccacaagatgtc
tcagatgagatcgaagaagatccaacaggtggaaagataaaatgggagcagggaaagctt
aatggagctcctaacaaggtagaggagatcatccaatttcacatcggtgacgtggtcaca
tcgttgcaaaaggcatctttgattccagggggtggagaatgcattttgtacgggacggtg
atgggaagcttgggagctttgcatgctttcacctcccgtgacgatgttgatttcttttct
cacttggagatgcatatgaggcaggaacatccacctttatgtggaagagatcatatgggt
tatagatcagcttattttcctgtgaaggatgtgatcgatggggatctgtgtgagcagttc
ccatccctacccttagatatgcagagaaagattgcagacgaattggaccgtactcccgga
gaaatactgaagaaacttgaagaagtacgaaataagattatttaa
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