Cucumis melo (muskmelon): 103500360
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Entry
103500360 CDS
T03195
Name
(RefSeq) eukaryotic initiation factor 4A-3
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
cmo
Cucumis melo (muskmelon)
Pathway
cmo03013
Nucleocytoplasmic transport
cmo03015
mRNA surveillance pathway
cmo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cmo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103500360
09122 Translation
03013 Nucleocytoplasmic transport
103500360
03015 mRNA surveillance pathway
103500360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmo03019
]
103500360
03041 Spliceosome [BR:
cmo03041
]
103500360
03009 Ribosome biogenesis [BR:
cmo03009
]
103500360
03012 Translation factors [BR:
cmo03012
]
103500360
Enzymes [BR:
cmo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103500360
Messenger RNA biogenesis [BR:
cmo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
103500360
mRNA cycle factors
Stress granule specific factors
103500360
Spliceosome [BR:
cmo03041
]
Complex C
Other components
EJC/TREX
103500360
Ribosome biogenesis [BR:
cmo03009
]
Eukaryotic type
90S particles
Helicases
103500360
Translation factors [BR:
cmo03012
]
Eukaryotic type
Initiation factors
eIF-4
103500360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
103500360
NCBI-ProteinID:
XP_008461865
UniProt:
A0A1S3CH11
LinkDB
All DBs
Position
4:complement(24393278..24397531)
Genome browser
AA seq
409 aa
AA seq
DB search
MAAAATTSVVPPNRRRISAPEDKLEFETTEGVEPILTFDQMGIKDDLLRGIYAYGFEKPS
AIQQRAVRPIIEGRDVIAQAQSGTGKTSMIALTVCQMVDTTSREVQALILSPTRELATQT
EKVILAIGDYINIQAHACIGGKSVGEDIRKLEFGVQVVSGTPGRVCDMIKRRTLRTRAIK
LLVLDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPHEILEMTNKFMTDPVRILVK
RDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVEWLTEKMRSNNF
TVSHMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYI
HRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
atggcggctgcagctacaacgagcgttgtgccaccgaatcggcgtcggattagcgcgccg
gaagacaaactggaattcgagacgacggagggggttgagccgatcttgactttcgatcag
atgggcattaaagatgaccttcttcgtggaatatatgcatacggttttgaaaagccatct
gccattcagcagagagctgtgaggccgattattgagggtcgagatgttattgcgcaggct
caatctgggactgggaagacttccatgattgccctcaccgtttgccagatggttgatacc
acaagtagagaggtgcaggccttgatcttgtcccctacgagagaattggctactcagaca
gagaaggttatattggcaattggcgactacattaatatacaagcgcacgcatgtattggt
ggcaaaagtgtgggtgaagatatcagaaagcttgagtttggagttcaggttgtgtcggga
actcctggaagagtctgtgacatgatcaagagaaggacattgcgtaccagagccattaag
ttattagttctggacgagtctgatgaaatgctgagcagggggtttaaagaccaaatttat
gatgtatatcgttatcttccaccagaacttcaggttgtcttgatttctgctacccttcct
catgaaatcctggagatgacaaacaagtttatgacagatcctgtgaggattcttgtcaag
cgtgatgagttaactttggagggtattaagcaattctttgtcgcggttgaaagggaagaa
tggaagtttgataccttatgtgatctttatgataccttgactatcactcaagctgtcatt
ttctgtaacactaagcggaaggttgaatggttgactgagaagatgcgaagtaataacttc
actgtatcacatatgcatggggacatgcctcaaaaggaaagagatgcaatcatgggggag
ttccgatcaggaactacccgcgttctaattactactgatgtttgggcacgagggcttgat
gttcagcaggtatcacttgtgataaattatgaccttccaaacaatcgagaactttacatt
cacaggataggaaggtcgggtcggtttgggcgcaagggtgttgctattaactttgtgaaa
agcgatgacatcaagatcctgagagatattgagcaatactacagtacccagattgacgag
atgcccatgaatgttgctgatttgatttaa
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