Cucumis melo (muskmelon): 103500419
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Entry
103500419 CDS
T03195
Name
(RefSeq) probable U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
cmo
Cucumis melo (muskmelon)
Pathway
cmo03018
RNA degradation
cmo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cmo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103500419
09123 Folding, sorting and degradation
03018 RNA degradation
103500419
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmo03019
]
103500419
03041 Spliceosome [BR:
cmo03041
]
103500419
Messenger RNA biogenesis [BR:
cmo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103500419
mRNA degradation factors
5'-3' decay
Lsm complex
103500419
Spliceosome [BR:
cmo03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
103500419
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
103500419
NCBI-ProteinID:
XP_008461936
UniProt:
A0A1S3CFQ0
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All DBs
Position
1:complement(9385873..9391367)
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AA seq
175 aa
AA seq
DB search
MIIWKLAFSWVFFFYRSSSVCFVSLKMLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDT
WMNIHLREVICTSKDGDRFWRMPEFYIRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGV
GRGRGRGREDGPGGRSAKGMGRGFDDGAKAASGGRGKGGPGGKPGAIRVGGRGRG
NT seq
528 nt
NT seq
+upstream
nt +downstream
nt
atgatcatctggaaacttgcattctcttgggttttttttttctacaggtcttctagtgtc
tgcttcgtatctttaaagatgcttcctctttccctcctaaagactgctcaaggacaccca
atgttggtggaattaaaaaacggtgagacatacaacggccatttggttaattgtgacaca
tggatgaacattcatcttcgggaagtcatctgcacttctaaagacggtgatcggttttgg
cgaatgcccgaattttatatccgtggtaatacaatcaagtatttgcgagttccagatgag
gttattgacaaagttcaggaagaaaccaaaagccgtgcagataggaaacctctgggtgta
gggcgtggaagaggaagagggcgggaggatggtccaggtggcaggtcagctaaaggaatg
gggcgaggctttgatgatggtgcgaaagctgcttctggtggccgtggaaagggtggccct
ggtgggaaacctggtgccatcagagttggaggcaggggacggggttga
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integrated database retrieval system
