Cucumis melo (muskmelon): 103500583
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Entry
103500583 CDS
T03195
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog isoform X1
KO
K20184
vacuolar protein sorting-associated protein 41
Organism
cmo
Cucumis melo (muskmelon)
Pathway
cmo04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cmo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
103500583
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cmo04131
]
103500583
Membrane trafficking [BR:
cmo04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
103500583
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps41
Beta-prop_Vps41
zf-RING_Vps41
Clathrin
WD40_CDC20-Fz
zf_RING_Vps8
WD40
WD40_WDHD1_1st
Beta-prop_HPS5
WD40_Prp19
zf-RING_2
Beta-prop_EML_2
WDR55
zf_RING_Vps8_fungal
Beta-prop_WDR11_2nd
EIF3I
Motif
Other DBs
NCBI-GeneID:
103500583
NCBI-ProteinID:
XP_008462162
UniProt:
A0A1S3CGC3
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Position
12:10047229..10122612
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AA seq
960 aa
AA seq
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MAPILSVNGVEGDDEREEEEEDDEDDDEEEEMADDEEEPRLKYQRMGGSVPSLLASDAAS
CLAVAERMIALGTHAGTVHILDFLGNQVKEFPAHTAVVNDLSFDTEGEYVGSCSDDGSVV
INSLFTDERMRFEYHRPMKAIALDPDYAKKTSRRFAAGGLAGHLYFNSKKWLGYKDQVLH
SGEGPIHAVKWRTSLIAWANDAGVKVYDAANDQRITFIERPRGSPRPELLLPQLVWQDDT
LLVIGWGTSVKIASIRTNHNRAANGTQSSRHVPTSSMNRVDIVASFQTSYLITGMAPFGD
VLVVLAYIPGEEGEKDFSITAPSRQGNAQRPEVRVVTWNNDELSTDALPVHGFEHYKAKD
YSLAHAPFAGSSYAGGQWAAGVEPLYYIVSPKDIVIAKPRDAEDHIAWLLEHGWHEKALE
AVEAGQGRSELLDEVGSKYLDHLIVERKYAEAASLCPKLLRGSASAWERWVFHFAHLRQL
PVLVPYIPTENPRLRDTAYEVALVALASKSLFHKDLLTTVKTWPPVIYSAVPVISAIEPQ
FNTSSMTDALKEALAELYVVDGQYEKAFLLYADLLKPDIFDFIEKYNLHEAIREKVVQLM
MLDCKRAVQLFIQNKELIPPNEVVSQLFKAGDKCDFRYFLHLYLHSLFEVNPHAGKDFHD
IQVELYADYDTKMLLPFLRSSQHYTLEKAYDICIKKNLLREQVFILGRMGNAKQALAVII
DKLGDIEEAVEFVSMQHDDDLWEELIKLCLHKAEMVGMLLEHTVGNLDPLYIVNMVPNGL
EIPRLRDRLVKIITDYRTETSLRHGCNDILKADTVNLLVKYYKEARHGIYLSNEEDEARG
KRNENKVSQSIQKSLNVRMMEVKSKTRGGTRCCICFNPFSIQNISVIVFFCCHAYHETCL
IESTSNLDAKKGTGETGHDLASDFDYDNGEMEDDEDGEDDKDMGGPRMRCILCTTAASKT
NT seq
2883 nt
NT seq
+upstream
nt +downstream
nt
atggctcccattctatcggtaaacggcgtcgaaggagacgacgagagggaggaggaggag
gaggacgatgaggacgatgatgaagaagaagaaatggctgacgacgaggaggagcccagg
ctcaagtatcagagaatgggaggaagcgtaccatcattgctggctagtgatgccgcctcc
tgccttgccgttgccgagcggatgatcgctcttgggactcacgccggcaccgttcatatt
ctcgactttctcgggaatcaggttaaggagttccctgctcatactgccgtagtcaacgat
ctcagctttgatacagaaggtgaatatgtgggtagttgttcggatgatggttcggttgta
ataaatagtcttttcactgacgagagaatgaggtttgagtatcatcgcccgatgaaggca
attgcattggacccagactatgcaaaaaaaacttcaagaagatttgcagcaggtggtcta
gctggccatttatattttaattccaagaaatggctaggatacaaagaccaggtcttgcat
tctggtgaaggcccaatacatgcagtgaaatggagaacgagccttattgcttgggcaaat
gatgcaggcgtaaaggtttatgatgctgcaaacgatcagcgaattacatttattgaaaga
ccgagaggaagcccacgtcctgaacttttgctccctcagttagtttggcaggatgatact
ctgttggtcattggctggggtacatctgtcaagattgcatcaattagaacgaaccataat
agagcagccaatgggacacaaagtagtaggcatgttccgacatctagcatgaaccgggtt
gatatagtggcatcttttcaaaccagctacttaatcacgggaatggctccatttggagac
gtcctggttgttttggcttatattcctggggaagaaggtgaaaaagattttagtataact
gctccatcccggcagggaaatgcccagagaccagaagttcgcgttgtaacatggaacaat
gatgaattatctaccgatgccctaccggtacatggttttgagcattacaaggcaaaggac
tattcccttgcacatgctccctttgcaggcagcagctatgctggtggtcagtgggctgcg
ggtgttgaacctctgtactatattgtatccccaaaagacatagttattgcaaagcccagg
gatgctgaagatcatattgcttggcttcttgaacacggttggcacgaaaaagctttggaa
gcagttgaagcaggtcaaggaagaagtgaactacttgacgaggtaggatccaaatatctt
gatcacttgattgtggagagaaaatatgcggaagctgcctcgctgtgtcccaaattgttg
cggggctcagcttctgcttgggagagatgggttttccactttgctcatttgcgtcaactt
cccgtattagttccatacataccaacagaaaaccctagattgcgtgatactgcttatgag
gttgctctcgttgctcttgcttcaaagtcattgtttcataaggatttattaacgactgtt
aagacttggccacctgtaatttattctgccgtacctgttatctcagccatagaacctcag
ttcaatacttcttcaatgactgatgctcttaaagaagcattagctgagctatatgtcgta
gatgggcagtatgagaaagcttttttgctttatgctgatctgctgaaaccagacatattt
gactttattgagaaatacaatctgcatgaggccattcgtgagaaggttgtccaactcatg
atgctagattgcaagcgtgctgttcaattgtttatccaaaataaggaacttattcctcca
aacgaagttgtttcacagcttttcaaagctggcgataagtgtgatttcagatatttcttg
cacctatatctgcattccttatttgaagtaaatccacatgctggaaaggatttccatgac
attcaggtggagctttatgctgactacgatacaaagatgctgctgccttttcttcgtagt
agtcaacattatacacttgagaaggcatatgatatttgcattaaaaaaaatcttttgagg
gagcaagtctttattcttggaagaatgggaaacgcaaaacaagcccttgctgtcatcatt
gataaattaggagatatagaagaggcagtagagtttgttagcatgcaacatgatgatgat
ctctgggaagaactaataaagctatgtcttcataaggctgaaatggttggcatgttattg
gagcacacagttggcaatctagatcctctttatattgtcaacatggttcctaatggttta
gagatacctcgcctccgggatcggctagttaaaatcattactgattacaggacggaaacc
agtcttagacatggatgcaatgatattttaaaggccgacactgtgaatctattggttaag
tactacaaagaggccagacatggaatttacttgagcaatgaggaagatgaagcacgtggg
aagaggaacgaaaataaggtttctcaatcaattcaaaaatctttgaatgttagaatgatg
gaggtgaagtcgaaaactcggggaggcactcgatgctgcatatgttttaatccattttca
atacaaaacatttcagtcatcgtgttcttttgctgccatgcgtatcacgagacttgtctc
atagaatcaacctccaatcttgatgctaagaaagggactggagaaactggccatgacttg
gcatctgactttgattatgataacggagaaatggaggacgacgaagacggtgaggatgat
aaagatatgggcggtcctagaatgcgttgtattttatgtactaccgctgcttccaagact
tga
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