Cucumis melo (muskmelon): 103501340
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Entry
103501340 CDS
T03195
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 38-like
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
cmo
Cucumis melo (muskmelon)
Pathway
cmo03013
Nucleocytoplasmic transport
cmo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cmo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
103501340
03015 mRNA surveillance pathway
103501340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmo03019
]
103501340
Enzymes [BR:
cmo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103501340
Messenger RNA biogenesis [BR:
cmo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
103501340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Motif
Other DBs
NCBI-GeneID:
103501340
NCBI-ProteinID:
XP_008463114
UniProt:
A0A1S4E419
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Position
9:complement(16447791..16462005)
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AA seq
508 aa
AA seq
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MADHTAPDSTSDVSAAAAAVTADSSSAPPVVTTPVPKRAWGDEEDDDVVESGDSSSAPSE
YLESLKIQDETNLEEPIDSNITAVTTGDTPYSSASTFEDLNLSKELLKGLYVEMKFHKPS
KIQAISLPMILTPPYKDLIAQAHNGSGKTTCFVLGMLSRVDVNLKAPQAFCICPTRELAM
QNIEVLKKMGKYTGITSECAVPADSANYIPMSKRPPITAQVVIGTPGTIKKWMSSRKLGV
SCVKILVFDEADHMLGEDGFQDDSLRIMRDIERSSSHCQVLLFSATFDENVKNFVSRVVK
DYNQLFVKKEELSLESVKQYKLICPDELTKIRVIKDRIFELADKLGQTIIFVRTRNSAGM
LHKALVDLGYEVTTIQGALTTEIRDKIIKEFKDGLTKVLISTDLLARGFDQQQVNLVINY
DLPLKYEPSPQATKYRSSSLSEPNYEVYLHRIGRAGRFGRKGAVFNLLCGDEEIMLMDKI
QNHFRSEIIEVRDSDEDIQAALKAAGLV
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atggcagatcacacggctccagactctaccagcgacgtgtcggccgctgctgccgccgtc
accgccgactcaagttctgccccacctgtagttaccacaccggtgcccaaacgagcttgg
ggtgatgaagaagacgatgatgtggttgaatctggagactcatcctctgcgccttccgag
tacttggaatcccttaaaatccaagacgaaacaaatcttgaagaaccgatagactctaac
atcacagcggtgacaaccggtgatactccatattcgtccgctagtacttttgaggatttg
aatctgtctaaagagttgttgaagggtttgtatgttgagatgaaattccataagccaagt
aaaatccaagctataagtttacctatgatcttgactcctccttacaaagatttaattgct
caagcacacaatggttctggaaagactacttgttttgtgcttgggatgttgagtcgcgtt
gatgtcaacttgaaggctcctcaggcgttttgcatatgtcctacaagggagttagccatg
cagaatattgaggttctcaagaagatgggaaaatacactgggataacttccgagtgtgct
gttcctgctgacagtgctaactatatacctatgtcaaagcgaccaccgataactgcacaa
gttgtgatcggaactcctggcacaataaagaaatggatgtcgtcgaggaagttgggagta
agttgtgtgaagattcttgtttttgatgaggctgatcatatgcttggcgaggatggcttt
caggatgattcattgagaatcatgagggacattgagagaagtagctctcattgccaggtg
cttctgttctctgctacattcgatgagaatgttaagaactttgtatctagggttgttaaa
gactacaaccaactttttgtgaagaaggaagaactttctttggagagtgtgaagcaatac
aagttgatatgtccggatgaattaactaaaattcgagtcataaaagatagaatttttgaa
cttgcggacaaattgggtcagacaattatatttgtgcgaacaagaaacagtgcaggcatg
ttacataaggcactagttgatcttggttatgaggtgactactattcaaggggcattgaca
actgaaattagagataaaataataaaagagttcaaggatggtttgaccaaagttcttatt
tcgactgatcttctagctcgaggctttgatcagcagcaggtcaatctagttatcaattat
gatcttcctcttaaatatgaaccttctccacaagcaacaaaatatagatcttcctcgtta
tctgagcctaactatgaggtgtaccttcatagaattggtcgggcaggtcgttttgggcgc
aagggagctgtgtttaacttgctgtgtggcgatgaggaaatcatgctaatggacaaaatt
cagaaccattttcgctccgaaataatagaggtccgagactccgatgaagacattcaagca
gccttaaaagctgccggattggtttga
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