Cucumis melo (muskmelon): 103501359
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Entry
103501359 CDS
T03195
Name
(RefSeq) pre-mRNA splicing factor SR-like 1 isoform X1
KO
K12850
pre-mRNA-splicing factor 38B
Organism
cmo
Cucumis melo (muskmelon)
Pathway
cmo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cmo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103501359
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cmo03041
]
103501359
Spliceosome [BR:
cmo03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
103501359
Complex C
U4/U6.U5 tri-SnRNP related factors
103501359
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Gene cluster
GFIT
Motif
Pfam:
PRP38
Motif
Other DBs
NCBI-GeneID:
103501359
NCBI-ProteinID:
XP_008463144
UniProt:
A0A1S3CIJ0
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Position
9:15890754..15898974
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AA seq
488 aa
AA seq
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MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR
GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADPKTLWNWFEPYVK
DDEEFSPGSHGRMTTMGVYVRDLLLGQYYFDTLFPRIPVPVLRQVVSNLEKLKLPSKHSG
VTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVRRTLPSSVNDRDINDD
LRRSPSNRRSQSREHPDSRERSRDREYDRERSRDREYDRERSRDRDYDRERSRDRDYDRE
RSRDRDYDRERSRDRDYDRERSRDRDYDRDRDRGRDRDRDRELDRDREKYRDRERDRDRE
REKARDRERDRERDRERSYDYDRRTHYSDRESRRDFERSSRDGGTRHYRRSRSRSRSRSR
GRSLQTHHEREQSPARGGTTEKASVISSNLAKLKDIYGDVSEQKGDSSKINRRDSSGEEV
IRLGGSWK
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atggagataaagacttgcgggaagccaattgattctttgctggagaaggttctatgtatg
aatattctgtcttctgattactttaaggagctatatcgtttgaaaacataccatgaagtc
gttgatgagatttataaccaagttgatcacgtggagccatggatgactggtaactgccgt
ggcccttcaacagcattctgccttctgtacaagtttttcaccatgaagctgactgttaag
caaatgcatgggctgttaaagcatgaggattctccttacatcagagcgattggatttctc
tacttaagatatgttgcagatccaaagactctctggaattggtttgaaccgtatgttaaa
gatgatgaggaattttcacccggatcccatggacggatgactacaatgggtgtttatgtg
cgtgatttgctccttggacagtattactttgacacccttttcccacgtattccggttcct
gtcttgcggcaagttgtatctaatctcgaaaagttgaagcttccaagcaagcactcgggc
gtgacaggggaaacacatcgaatagggtctgaagacactgcacggcggcccccttctgtt
aaagcttcactttcagtttcctttggacaacgagctccacatcgtgcctcaactagggat
tcatctcctgttcgtcgtacgctgccatcatctgtaaatgatagagatatcaacgacgat
ctacgaagatctccaagcaatcgccgtagtcaaagtcgtgaacatccagatagtagggag
aggagcagggatagagaatatgacagggagaggagcagggatagagaatacgacagggag
aggagcagggatagagattacgacagggagaggagcagggatagagattacgacagggag
aggagcagggatagagattacgacagggagaggagcagggatagagattacgacagggag
aggagcagggatagagattatgacagggacagagatagaggaagggatagggaccgagat
cgggaacttgatcgggacagagagaagtatagagatcgggaaagggaccgagacagagaa
agagagaaagccagggatagggaaagggacagagagcgggacagagaacgaagttatgat
tatgatcgaaggactcattacagtgacagagagagtagaagggactttgaaaggagtagc
cgtgatggtggcaccaggcattatcgaaggagtcgtagccgaagtaggagccgcagcaga
ggtcgaagtctacaaacacatcacgagagagagcaaagtcctgcaaggggcggaactacg
gagaaggcatctgtgatatcgagcaatctggcaaaactaaaagatatatatggtgatgtg
agcgagcagaaaggggattcgagcaaaattaatagaagagatagtagtggtgaagaagtg
attagattgggtggttcctggaaatag
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