Cucumis melo (muskmelon): 103501587
Help
Entry
103501587 CDS
T03195
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 isoform X1
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
cmo
Cucumis melo (muskmelon)
Pathway
cmo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cmo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103501587
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cmo03041
]
103501587
Enzymes [BR:
cmo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103501587
Spliceosome [BR:
cmo03041
]
Complex C
Other components
Step II factors
103501587
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
ATPase
CoV_NSP2_N
AAA_30
Motif
Other DBs
NCBI-GeneID:
103501587
NCBI-ProteinID:
XP_008463416
UniProt:
A0A1S3CJ82
LinkDB
All DBs
Position
6:33313245..33325523
Genome browser
AA seq
708 aa
AA seq
DB search
MERQGLNVKVSNNDCKSENISRKRKLAEHRKSLPVASVENLLIQEVLRNDTLIIVGETGS
GKTTQIPQFLFNAGFCRDGKAIGVTQPRRVAAVTVAKRVAEECGVEVGQKVGYSIRFEDV
TSSSTRIKYMTDGLLLREALLDPYLSRYSVIIVDEAHERTVHTDVLLGFLKKVQKTRSRS
LNDSFNTENVNTNGLVLKKGNNGKYVSSLRQHRGRKLPPLKLIIMSASLDARLFSEYFGG
ARAFRIPGRQYPVAISYTRKHVLDYSETTLITIFQIHLEESPGDILAFLTGQEEIESIEN
LAKETIQKLPESKRNLVVIPIYSALPSEQQLRVFAPTPPGVRKVILATNIAETSVTIPGI
KYVIDPGFVKARTYDPNKGMESLIVFPTSKAQALQRSGRAGREGPGKCFRQYPEDMFYKL
EDSTKPEIKRCNLSNVILQLTALGVDNVAEFDFLEAPPRQAIFKSLEQLILLGAIANDGK
LSDPVGHQMARIPLDPIYSKALIVASQSNCLEEMLITVSMLSVESIFYHPREKQEEARAK
MKCFSSPEGDHLTLINVYRSAVDFLNKKKLELNKDKLEKSLRKWCKENFINSRSLRHARD
IHSQIRGHVERMGLPLNSCGDDMLQFCRCLAGSFFLNVATKQPDGTYRDFASGEVVQIHP
SSVLFRKKPDCVIFNEFVQTNNKYIRNITKIDRLWLLELAPHYHALKS
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atggaaagacagggactcaatgtcaaggtctcaaataacgattgcaagagtgaaaatatc
tccaggaagcgaaaacttgctgaacatagaaagtcacttccagtagcttccgttgaaaat
ctgctcatacaagaggtgcttagaaacgatacattgattatcgttggtgaaactgggagt
ggaaaaacgacgcaaataccacaattcctgtttaatgctggattttgtcgagatggcaaa
gctataggggtgacccaacctcggcgtgttgctgctgtcactgtggccaaaagagttgct
gaggaatgtggtgttgaagtggggcaaaaggttgggtattctattagatttgaggatgta
acttctagttccacaagaatcaagtacatgacagatggtctactgctaagggaggcatta
ttggacccttatctttcaagatattcagttatcattgttgatgaagctcatgagagaacg
gttcatactgatgtattgctaggatttttgaaaaaagtgcagaaaacaagatctaggtct
ttgaatgactcttttaatacagagaacgtgaatactaatggcctagtattaaaaaaggga
aataatggcaaatatgtaagttccctcaggcaacatcgaggaaggaaactgcctccattg
aagttaattatcatgtctgccagcttagatgcacgacttttttctgagtactttggtggt
gcaagggcttttcgtatcccaggccgtcaatacccagtagctatatcttatactcgtaag
catgtattagattattcggagaccactcttattactatatttcagattcatttggaggag
agtcctggtgacatacttgcctttttgactgggcaagaggagatagaatctattgaaaat
cttgctaaggagacaattcaaaagttacctgaaagcaaacggaatttagtagttataccg
atatattcggcacttccatcggagcaacaattgcgagtttttgccccaactccacctgga
gttcgtaaggtgatattagcgacaaatattgctgagacatctgtgacaatacctggaatc
aagtatgttattgatcctggatttgtaaaagcccgcacttatgatccaaataaagggatg
gagtcgttgattgtttttccaacctcaaaagcacaagcactacaaaggagtgggcgtgca
ggccgtgaaggacctggaaaatgcttccgtcaatatcctgaggatatgttttataaactt
gaggattcaacaaagccggagatcaagagatgcaacctttctaatgtcattttacagttg
acggctttaggtgttgataatgtcgcggaatttgatttcttggaagcaccaccaaggcaa
gctattttcaagtcgttggagcagttgattctgcttggggctattgccaatgacggcaaa
ctatctgatccagtaggacatcagatggctcgtattccgttagatccaatatactctaaa
gctctgattgttgccagtcagtccaactgtttggaagaaatgctgataactgtgtcaatg
ctgtcagtggaatccattttttaccatcctcgtgaaaagcaagaagaggcaagagctaaa
atgaaatgtttttcaagtccagaaggtgatcatctcactctaatcaatgtttatcgatct
gctgtggattttttgaataagaaaaagttggaacttaacaaagacaaattggagaaaagc
ttgagaaagtggtgcaaagaaaattttatcaatagtagatctttgagacacgcacgtgac
attcacagtcaaattagaggacatgttgaacgaatgggccttcccctcaactcttgtgga
gatgacatgcttcagttttgtagatgccttgctggttccttttttctcaacgttgccaca
aagcagcctgatggaacatacagggattttgccagtggtgaggtggtacagattcatcct
tcttcagtgttattccgtaaaaaaccagattgtgtaattttcaatgagttcgtgcaaact
aataacaaatacatccgcaatatcactaaaattgatcgactttggcttttggaactggct
ccccattatcatgctctgaaaagctaa
DBGET
integrated database retrieval system
