Cucumis melo (muskmelon): 103501680
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Entry
103501680 CDS
T03195
Name
(RefSeq) regulator of nonsense transcripts UPF2
KO
K14327
regulator of nonsense transcripts 2
Organism
cmo
Cucumis melo (muskmelon)
Pathway
cmo03013
Nucleocytoplasmic transport
cmo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cmo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
103501680
03015 mRNA surveillance pathway
103501680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmo03019
]
103501680
Messenger RNA biogenesis [BR:
cmo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
103501680
mRNA cycle factors
P-body specific factors
103501680
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
103501680
NCBI-ProteinID:
XP_008463566
UniProt:
A0A1S3CJK4
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Position
9
Genome browser
AA seq
1194 aa
AA seq
DB search
MDHHEDDGRPGGESQPKRDDEETVARQEEIKKSFEAKMALRQSNLNPERPDSGFLRTLDS
SIKRNTTVIKKLKQINEEQREGLMDELRNVNMSKFVSEAVSAICDAKLRTSDIQAAVQIC
SLLHQRYKDFSPCLIQGLLKVFFPGKSGDELDADRNLKAMKKRSTLKLLMELFFVGVVED
SAIFNNIIKDLTSIEHLRDRDTTLTNLTLLASFARQGRILLGLPPTAQDHEEFFKSLNIT
ADQKKFFRKAFHTYYDAAAELLQSEHTSLRQLEQENAKILNAKGELNDENVSSYEKLRKS
YDHLYRNVSSFAEALDMQPPVMPEDGHTTRVSAGEDVSSPAAGKDSSVIEAIWDDEDTRA
FYECLPDLRAFVPAVLLGEAEPKANEQSAKPTENLAESEAEQGQQTSLEAIEVSTDCPLQ
DGKINEKGEKGKDREEKDKEKNNDTDKEKGKEKDGDRKMENEKEKLKNIEGTNLDALLQR
LPGCVSRDLIDQLTVEFCYLNSKANRKKLVRALFNVPRTSLELLPYYSRMVATLSTCMKD
VSVILLQMLEEEFNFLLNKKDQMNIETKIRNIRFIGELCKFKIASAGLVFSCLKACLDDF
THHNIDVACNLLETCGRFLYRSPETTVRMANMLEILMRLKNVKNLDPRHSTLVENAYYLC
KPPERSARVSKVRPPLHQYIRKLLFSDLDKSAIENVLRQLRKLPWSECEQYLLKCFMKVH
KGKYGQIHLIASLTSGLSRYHDEFSVAVVDEVLEEIRLGLEVNDYGMQQKRIAHMRFLGE
LYNYELVDSSVVFDTLYLILVFGHGTSEQDVLDPPEDTFRIRMIITLLQTCGHYFDRGSS
KRKLDRFFIHFQKYILSKGALPLDIEFDLQDLFAELQPNMTRYSSIEEINAAFVELEEHE
RSVSNDKPNTEKHLDAEKPSRATSTTTSANGRDRVNGSKENSGAHEDGADSDSDTGSGTI
EAEGRDDEESDLENHEDGCDTEDDEDDEEPGGPASDEDDEVHVRQKVPEVDPREEANFEQ
ELRAVMQESMDQRRQELRGRPTLNMMIPMNLFEGSTRDHHGRGAGGESGDEGLDEDAGGS
KEVQVKVLVKRGNKQQTKKMYIPRDCTLLQSTKQKEAAELEEKQDIKRLILEYNDREEEE
LNGLGSQTMNWMQTGGNRVPTRGNNWEASGGRSGGSRHPHHRYPGSGMHYSRKK
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
atggaccatcatgaagatgatggccgcccaggaggtgaaagtcaacccaagagagatgat
gaggaaactgttgctcgccaggaagaaattaaaaagtcatttgaggctaaaatggctcta
cgacaaagtaatctgaatcctgagaggcctgactctggattccttagaactttggattct
agtattaagcgcaacacaacagttattaaaaaattaaagcagataaatgaagaacaacga
gaagggctgatggatgagttgcgaaatgtaaatatgagtaaatttgttagtgaggccgtt
tctgccatctgtgatgccaagcttagaacttctgatattcaggctgctgttcagatctgt
tcgctccttcaccaaaggtacaaagacttttcaccatgcctgattcaaggactcttgaaa
gtgttctttcctggaaagtctggagatgagttggatgctgatagaaacttgaaggccatg
aagaagcgcagcactctcaaacttcttatggaactcttttttgttggagttgtagaagac
agtgctattttcaataatattatcaaggatcttacaagtattgaacatttgagggatcga
gatactaccctaactaatttaactctccttgctagctttgctcggcaaggaagaatcctt
ttgggtctaccgcctactgcacaagatcacgaggagttttttaagagcctcaatattact
gccgaccaaaagaaattcttcagaaaggcttttcatacatattatgacgctgcagcagaa
ttgcttcagtctgaacatacttcacttcgccaattggagcaggaaaatgcaaagatcttg
aatgcaaagggagagcttaatgatgaaaatgtctcttcttatgagaagttgcgaaaatct
tatgaccatttatatagaaacgtctcatcctttgcagaagcacttgatatgcaaccccca
gtgatgccagaggatggccacacgaccagggtttctgcaggagaagatgtttcatcgcct
gctgctggaaaagattcttctgtaattgaagccatatgggatgatgaagacacccgtgct
ttctatgaatgcttaccagatctcagggcatttgttccagcagtactgttgggagaagca
gagcctaaagcaaatgagcaatctgcgaagccgacagaaaatctggctgaatctgaagca
gaacaaggtcagcaaacttccctagaggccattgaggtttctacagattgtccgctacag
gatggcaaaattaatgagaaaggtgagaaagggaaggacagagaagaaaaagacaaagaa
aagaataacgatacagataaggagaaggggaaagaaaaagatggagatagaaagatggaa
aatgaaaaagaaaaacttaaaaatatcgaaggaacaaatttggatgctttgttgcagaga
ctccctggttgtgtcagccgtgaccttattgatcagctgactgtagagttttgttatttg
aattccaaggctaaccgaaagaagcttgtgagggctttgtttaacgtgcctaggacatca
ttggagttgctgccttactactcccgcatggttgcgacattgtcaacttgtatgaaggat
gtatctgtcattctcctccagatgttggaggaagagttcaactttttattgaacaaaaag
gaccaaatgaacattgaaacaaagattagaaatattaggtttattggagagctttgcaag
ttcaaaattgcttcagccggcctcgtttttagctgtttgaaggcatgtttagatgatttc
actcaccataatattgatgttgcttgtaatcttcttgagacctgtggacgttttctttat
cggtctcctgaaactacagtacggatggctaacatgttggagatattgatgcgcttgaaa
aatgtaaaaaatttggatccccgacacagcaccctggtagaaaatgcatactatctttgc
aagcctccagagagatctgcacgagtgtcaaaagttcgtccaccattgcatcagtatatt
agaaagttactcttctcagatctagacaagtctgccattgagaatgtgttgaggcaactt
cggaaacttccatggagtgaatgtgagcaataccttttaaaatgttttatgaaagttcac
aaagggaagtatggccagattcacttgattgcttctctaacgtctggtttgagtcgatat
catgatgaattctcagttgctgttgttgatgaggtattggaagaaattaggcttggactt
gaagtgaatgattatgggatgcagcaaaaacgcattgctcatatgcggtttttgggggag
ctgtacaactatgaacttgtagattcatctgtggtctttgataccctttatttgattctt
gtctttggccatggcacttcagagcaagatgtattggatccacctgaggacactttccgc
atacggatgattatcacccttcttcaaacctgtggtcactactttgatcgtggatcttca
aagaggaaacttgatcgatttttcatacacttccagaaatatattctcagcaaaggagct
cttccgttggacattgagttcgacttacaggatttatttgcggaactgcagccgaacatg
accagatactcatccattgaagagataaatgctgcttttgtagaacttgaggagcatgaa
cgttcggtctcaaatgacaagcccaatactgagaaacaccttgatgcggaaaagcccagt
agagcaacttccactaccacctcagctaatggaagggacagagtgaatggctccaaggaa
aatagtggagctcatgaagacggtgctgatagtgacagtgatacaggaagtggcactatt
gaggcagagggacgagatgatgaagagtcggacttggagaatcatgaagatggatgtgac
actgaggatgatgaagacgatgaagaaccaggtgggcctgcttctgatgaggatgatgag
gttcacgttagacaaaaagtgcctgaggtggacccgagagaagaagccaattttgagcaa
gagctcagggctgtaatgcaggagagtatggatcagcgcaggcaagagcttcgtggccga
ccaacattgaatatgatgataccaatgaatttgtttgaggggtcgacgagggaccaccat
ggaaggggggctggtggagagagtggagatgagggattggatgaggatgctggtggaagc
aaggaggttcaagtgaaagttcttgttaagcgtggaaacaagcagcaaaccaagaagatg
tatatcccccgtgattgcacgcttttacagagcactaaacagaaagaagcagcggagcta
gaagagaagcaagatattaagagattaatcttagagtataacgaccgggaagaggaagaa
cttaatggactaggctcccaaacaatgaattggatgcagacagggggcaatagagtccct
actcggggaaacaattgggaagcttctggtgggaggagcggtgggtcgcgtcatccccat
catcggtatcctggtagtggcatgcattatagtagaaagaagtga
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