KEGG   Cucumis melo (muskmelon): 103502534
Entry
103502534         CDS       T03195                                 
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
cmo  Cucumis melo (muskmelon)
Pathway
cmo03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cmo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    103502534
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cmo03041]
    103502534
Spliceosome [BR:cmo03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    103502534
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40_Prp19 WD40 Beta-prop_THOC3 Beta-prop_WDR3_1st Beta-prop_WDR3_2nd WD40_WDHD1_1st WD40_Gbeta WD40_CDC20-Fz EIF3I Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_2nd WDR55 Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_1st Beta-prop_WDR75_1st Beta-prop_EML Beta-prop_WDR36-Utp21_1st NBCH_WD40 ANAPC4_WD40 Beta-prop_TEP1_C Beta-prop_DCAF4 PRP4 Beta-prop_Aladin Beta-prop_EIPR1 WDR90_beta-prop_4th Beta-prop_IFT122_1st Beta-prop_WDR19_1st WD40_RFWD3 Beta-prop_Vps41 Beta-prop_RIG_2nd Beta-prop_SCAP Beta-prop_WDR41 Beta-prop_Nup120_160 WD40_like
Other DBs
NCBI-GeneID: 103502534
NCBI-ProteinID: XP_008464716
UniProt: A0A1S4E4U8
LinkDB
Position
10:24331931..24339170
AA seq 569 aa
MEIDDQNPASTAAESPETLPGGENEELDNPAEPTQPAATSVIPPSIVPAIAPIPPPIIRP
LAPLPSRPPLFRPPVTQNGELRTSDSDSEHDELAPARTAPGSTAEYEISEESRQARERHE
KAMQEFLMKRRASALAVPTNDMAVRARLRRLGEPITLFGEREMERRDRLRSIMARLDAEG
QLEKLMKVHEEEEAAATGGTEEAEEEVLQYPFYTEGSKALLDARIDIAKYSILRASSRLE
RAKRKRDDPDEDVEAEMDWALRQAESLVLDCSEIGDDRPLSGCSFSSDGKFLATSSLSGV
AKLWSMPQVRKVSNFKGHTERVTDVMFSPVNECLATASADRTARLWSPEGSLLKTFEGHL
DRLARIAFHPSGKYLGTTSFDKTWRLWDVETGVELLLQEGHSRSVYGIAFHQDGSLVSSC
GLDALARVWDLRTGRSVLALEGHVKPVLGVSFSPNGYHLATGGEDNTCRIWDLRKKKSLY
IIPAHSNLVSQVKYEPQEGYFLVTASFDMTAKIWSARDFKPVKTLSGHEAKVTSLDIISD
GQCIATVSHDRTIKLWSVNSKDKQTMDID
NT seq 1710 nt   +upstreamnt  +downstreamnt
atggaaattgatgatcaaaaccctgcatcaactgctgcggaatctcctgaaacccttcct
ggtggtgaaaatgaggaacttgataatccagccgaaccaactcaacctgcagctacatca
gttattccaccttcaattgtccctgccattgctcctatcccccctccaattatccgtcca
ttggctcctcttccgagccgacctcccctctttaggccccctgtaacacaaaatggtgag
ttgagaacaagtgactcagactcagaacatgatgaattggctcctgcccgaacagctcca
ggttcaactgcagagtatgaaatctcagaagagagcaggcaggctagggagcgtcatgaa
aaagccatgcaggaatttttgatgaagcgtcgtgcttctgctttagcggtgcctactaat
gacatggctgttcgagctcgtcttcgacgtcttggtgagcccataactctttttggagaa
agagaaatggaaagacgggacaggttgcggtcgataatggcacgattggatgctgaaggg
caattagagaagctcatgaaagttcatgaggaagaggaggctgcagctactggtggaact
gaggaggctgaggaggaagtgcttcagtatcccttttatactgaggggtccaaagctctc
ttggatgcaagaattgatattgcaaagtattccatcctaagagcatcttcacgccttgag
cgtgcaaaaaggaagcgggatgacccagatgaagatgtggaagcagaaatggattgggct
ctgaggcaggctgaaagtttggtcctggactgtagtgagataggagatgatcgaccactt
tctggttgttctttctcgtctgatggaaaatttcttgccactagttcattgagtggagtt
gcaaaattgtggagcatgcctcaagtaaggaaggtttccaactttaagggacacacagag
cgtgttactgatgtaatgttttctccagtgaatgagtgtttagcaactgcctctgctgac
cgaactgcaaggttgtggtctccagaaggatctctacttaaaacatttgagggccatcta
gaccgccttgcacgaattgccttccacccgtcgggcaagtacttgggcacaactagcttt
gacaagacctggagattatgggatgttgaaactggtgtagaattacttcttcaagaaggt
cacagtagaagtgtctatgggatagccttccaccaggatggatccttggtatcatcttgt
ggccttgatgcacttgctcgcgtttgggatcttcgaactggtaggagtgttcttgccttg
gaaggccacgtcaagccagtccttggagttagtttttcacccaacggttatcatttggct
actggtggagaagataacacttgtcggatatgggatttaaggaagaaaaaatctctttac
ataatacctgcacattcaaaccttgtttcacaggtgaaatatgaacctcaggagggatat
ttcttggttactgcatcatttgatatgacagcaaagatttggtctgctcgagattttaag
cctgtgaagacactctctggtcacgaagcaaaagttacatctttggatataatttcagac
ggacagtgtattgcaaccgtctcacatgatcggaccataaagctctggtctgttaatagt
aaagacaaacagactatggacattgattaa

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