Cucumis melo (muskmelon): 103503346
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Entry
103503346 CDS
T03195
Name
(RefSeq) 5'-3' exoribonuclease 3 isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
cmo
Cucumis melo (muskmelon)
Pathway
cmo03008
Ribosome biogenesis in eukaryotes
cmo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmo00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
103503346
09123 Folding, sorting and degradation
03018 RNA degradation
103503346
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmo03021
]
103503346
03019 Messenger RNA biogenesis [BR:
cmo03019
]
103503346
03009 Ribosome biogenesis [BR:
cmo03009
]
103503346
03016 Transfer RNA biogenesis [BR:
cmo03016
]
103503346
Transcription machinery [BR:
cmo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
103503346
Messenger RNA biogenesis [BR:
cmo03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
103503346
Ribosome biogenesis [BR:
cmo03009
]
Eukaryotic type
Pre-60S particles
RNases
103503346
Transfer RNA biogenesis [BR:
cmo03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
103503346
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
DUF530
Motif
Other DBs
NCBI-GeneID:
103503346
NCBI-ProteinID:
XP_008465734
UniProt:
A0ABM3L7I1
LinkDB
All DBs
Position
9:9015416..9027077
Genome browser
AA seq
1110 aa
AA seq
DB search
MGVPAFYRWLAEKYPLVVVDVIEEEPVVIDGIAIPVDTSKPNPNNLEFDNLYLDMNGIIH
PCFHPEDRPSPTTFSEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFR
AAKDAIDAAAEETRLREEFEKEGRKLPPKEESQVFDSNVITPGTDFMAVLSIALQYYVHL
RLNNDPGWKNIKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIMLA
LATHEVHFSILREIVFTPGQQEKCFLCGQMGHFAADCEGKAKRKSGEFDEKAEEVNIKKP
YQFLHIWTLREYLEYEMRIPNPPFAIDIERIVDDFVFMCFFVGNDFLPHMPTLEIREGAI
NLLLAVYKKEFRALGGYLTDGSKPNLQRVEHFIQAVGSYEDKIFQKRARLHQKQADRIKR
EKGQTRRGDDAEPQVQPSLVAVARFHESRLASGPCPSPYEQSGVRKATSRFSGMNIKNKQ
SLESHGSGTSVRHNKVARLSSGASIGAAIVEAENSLEIDINENKKELKTKLKEVLREKSD
VFNSNKSEVDKIKLGVPGWRERYYNEKFSANTPEELDDIRNDVVLRYTEGLCWVMHYYYE
GVCSWQWFYPYHYAPFASDLKGLSKLNISFNLGSPFKPFNQLLGVFPAASAHALPEQYRK
LMTDQNSPIIDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLAEVAKVEHTLTEEEARR
NSVMFDMLFVTSSHPLSVSIYSLDNRCKQLAERDRTEVKEKINPEHRVNCSEGMNGYLSP
CLGELCPPIFRSPVEGLEDIIDNQVICAIYQLPDAHKHITQPPAGVNFPPKIVSLGDMKP
EPVLWHEDSGRRHHHHHHHHHQDNGSYNENGRPNPPGAISGRQLGDAAHRLVVNSLQVRG
ADRTGHNNWQTPPLSHTAQPYIPGQPPPHSHRDYRSRDQAVDYRMPPGGRPNYSQGHHNT
ARGHQDHGYRQPLAGQHHRDMRHHSQHYNTRAHNQASSQHYNENPEAYYPSSASTAWRGH
SDVPPYHHNGPTSHHPPTYQSGYNYNQRPAGPGSSQQQQHHGGAWQPPPPANHGAPHHQY
GNKYSVLDRRGNGGPPSSAPHSYGRRQKPY
NT seq
3333 nt
NT seq
+upstream
nt +downstream
nt
atgggagttccagccttctataggtggttagcagagaagtatcctttggtggttgtggat
gtgattgaggaagagcccgttgttatagatggcattgccattccagttgatacaagcaaa
cccaatccaaacaatcttgaatttgataacctctacctagacatgaatggcattattcat
ccttgcttccatcctgaagataggccttctccaaccacttttagcgaggtatttcagtgt
atgttcgattatattgataggctttttgtcatggtccgacctagaaaattactatacatg
gctatagatggtgttgcccctagggcaaaaatgaatcaacaacgatctcgacgatttaga
gctgcaaaagatgcaatagatgcggctgctgaagagacacgactgagagaagagtttgag
aaggagggacggaagcttcctcctaaggaggagtcacaagtttttgattccaatgtgatt
actcctggaactgattttatggcagttctgtccattgctttgcagtactacgttcatctt
aggctaaacaatgaccccggttggaaaaatatcaaggttattctctccgatgctaatgtt
cccggtgaaggggaacacaaaataatgtcctatattcgtcttcagagaaatcttcctggt
tttgatcccaacactcgtcactgcctgtatggtttggatgcagatttgataatgttagct
ttggctactcatgaagtccatttttcaattttgcgtgagatcgtgtttactccggggcag
caagaaaagtgctttctatgtggccagatgggtcattttgcagctgactgtgagggtaaa
gccaagagaaaatctggagagtttgatgagaaagctgaagaagttaacattaaaaaacca
taccagtttctccatatatggacacttagagagtacttggaatatgagatgcgtattcct
aatcctccatttgcaatcgacattgaacgcattgtggatgattttgtgttcatgtgtttc
tttgttggcaatgactttttacctcatatgcccacattagagattcgggagggcgcaatt
aacttgctgttggctgtgtacaagaaggaatttagggcacttggtgggtatttgactgat
ggaagcaagccaaatttgcaaagagtagaacattttattcaagctgttggaagttatgag
gataaaatattccagaaaagagctagactgcatcagaagcaggcagatagaataaagcgc
gaaaaaggtcagacaagaagaggagatgatgcagagcctcaggttcaaccatccctagtt
gctgttgctcgttttcatgaatctcgcctagcttcaggtccttgtccttcaccatatgaa
caatcaggagtgagaaaagccacatccagattctcaggaatgaacattaagaacaaacaa
tcactggagtcccacggtagcggtacctctgttcggcataataaagttgcacgtctatca
tctggggcttctattggtgctgctattgttgaagccgaaaactctttggaaatagatatc
aatgagaacaagaaggaattgaagacaaagcttaaggaggtactgcgtgagaagtctgat
gttttcaactctaataaatcagaagtagacaagattaaattgggtgtacctgggtggaga
gagaggtattataatgaaaagttttctgcaaatactccagaggaacttgatgacatacga
aatgacgttgttttgagatacactgaaggtctatgttgggttatgcactattattatgaa
ggcgtttgttcttggcaatggttttatccttatcattatgcaccatttgcttctgatctc
aaaggtctcagtaagctgaatatatcattcaatctagggtctcctttcaagccattcaat
cagctactgggtgtcttccctgctgctagtgcgcacgcacttcctgagcagtatcggaaa
ttgatgacagatcagaactcgcctattattgatttctatcctactgattttgaagtggat
atgaatggaaaacggtattcctggcaggggattgcaaaattgcctttcattgatgaagcc
cggcttcttgcagaggttgcaaaagttgagcatacgttgacagaagaagaagcacgaagg
aatagtgtaatgtttgacatgctttttgttacatcttctcaccccctctctgtaagtata
tactcgctcgacaaccgctgtaagcagttggcagaaagagatcgtactgaggtcaaggaa
aaaataaaccctgaacatagggttaactgcagtgaaggaatgaatggttatctctctcca
tgtttgggagagctctgccctcctatattcaggtctccagttgagggcttagaggatatt
atagacaaccaagtcatatgtgctatatatcaacttccagacgcacacaagcatatcact
caaccgcctgctggggtcaactttcctccaaagattgtgagcttgggtgacatgaaacct
gaacctgttttatggcatgaagattctgggaggagacatcatcatcatcatcatcatcat
catcaagacaatggaagttacaacgagaatggaaggccgaatcctcctggagcaatttca
ggtcgacaactaggggatgcagcacatagacttgttgttaacagtttgcaggttaggggg
gcagatcgcactggtcataacaattggcagacaccgcccctttcccatacagctcaaccc
tacatccctgggcaacctcctccacattcacatagagattatagatcaagagatcaagca
gtagactacagaatgccacccggtggcagaccgaattactcccaaggtcatcacaacaca
gcacgtggccaccaagatcatggttaccgtcagccactagcagggcaacaccaccgcgac
atgagacatcattcccaacactacaatactagagcacacaatcaagcgagttcccaacat
tataatgagaatcctgaagcttactacccatcatcggcatcaacagcatggcgaggccac
agtgacgtgcctccctatcatcataatggacctacatcccaccaccctccaacctatcaa
agtggttacaattacaaccaacggcctgccggtccagggagtagtcagcagcagcagcat
cacggtggtgcgtggcagcctcctccgccagccaaccatggtgcccctcaccaccaatat
ggaaataagtattcagtacttgatagaagaggaaatggggggccaccttcttcagcacca
cattcctatggacgcaggcagaaaccatactaa
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