Caldicellulosiruptor morganii: OTK00_000553
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Entry
OTK00_000553 CDS
T08774
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
cmor
Caldicellulosiruptor morganii
Pathway
cmor02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
cmor00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
OTK00_000553 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmor03021
]
OTK00_000553 (rpoD)
Transcription machinery [BR:
cmor03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
OTK00_000553 (rpoD)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Exonuc_VII_L
Motif
Other DBs
NCBI-ProteinID:
WAM34366
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Position
588264..589499
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AA seq
411 aa
AA seq
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MTEQNIGQNNENVINQHSTEEANASIQPQQDQKVEPENKNQAAKSSKKSSEEKNKNIEEK
KNLIREKVRELISLGQSKGFLTYSEIQEILDKVELDASQVENIYDTLESMGIDVVDDRIS
EEELLKDDLENLPEGIAIDDPVRMYLKEIGKIPLLTPEEEIELAKRIEQGDEEAKKRLAE
ANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLLKAVEKFDYRKGYKFSTYATWWIRQAITR
AIADQARTIRIPVHMVETINKLVRVSRQLLQEKGREPTPEEIAKEMNMPVEKVREIMKIA
QEPVSLETPIGEEEDSHLGDFIPDDDALAPSEAAAHSMLKEQLMEVLDSLNEREKKVLKL
RFGLEDGRARTLEEVGREFNVTRERIRQIEAKALRKLRHPSRSKKLKDFLE
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atgacagaacaaaacattggacagaacaatgaaaatgttataaatcaacacagcaccgaa
gaagcaaatgcttcgattcagccacagcaggaccagaaagttgaacctgaaaacaaaaat
caggctgcaaagtcttcaaagaagagttcggaggagaagaataaaaatatagaagaaaag
aaaaacctgataagggaaaaggtgcgtgagctcatttcgcttggtcagagcaagggattt
ttgacgtattctgagattcaggaaatacttgataaagtagaacttgatgccagccaggtt
gagaatatatatgacactcttgagagtatggggattgacgttgtggatgacaggatttct
gaagaggagcttttgaaagacgatctggagaacctgccggaaggtattgcaatagatgac
cctgtaaggatgtatttgaaagagatcggaaaaattcctttgttaactcctgaggaagag
attgagcttgcaaagagaattgagcagggggatgaagaggcaaaaaagaggcttgctgag
gcaaacctgaggcttgttgttagcatagcaaaaaggtatgttggaagaggaatgctcttt
ttggacttgatacaggagggcaatcttgggcttctgaaagctgttgaaaagtttgactat
cgaaaaggctataagttctcaacctatgcaacgtggtggataagacaggcaattacacgg
gcaattgctgaccaggcgagaactattagaattcctgtgcacatggttgagacaatcaac
aaacttgtcagggtatcccgccagcttttgcaggagaaaggaagagaaccaacccctgaa
gagatagcaaaagagatgaacatgcctgttgagaaggtgcgggagataatgaagattgca
caggaacctgtgtcacttgagactccgattggagaagaggaagacagccacctgggtgat
tttatcccggatgatgatgctcttgcaccgtctgaggctgctgcacactctatgcttaaa
gagcagctgatggaagttttggattctctcaacgagcgggagaaaaaggtattgaagctc
aggtttgggcttgaagatggcagggcaaggaccttagaagaggttggcagagagttcaat
gtcacacgcgaacggattcgtcagattgaagcaaaggcactcagaaaactcagacaccca
agcaggagcaaaaaactcaaggattttctggaataa
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