Caldicellulosiruptor morganii: OTK00_001118
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Entry
OTK00_001118 CDS
T08774
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit UvrB
KO
K03702
excinuclease ABC subunit B
Organism
cmor
Caldicellulosiruptor morganii
Pathway
cmor03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cmor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OTK00_001118 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cmor03400
]
OTK00_001118 (uvrB)
DNA repair and recombination proteins [BR:
cmor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OTK00_001118 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
OTK00_001118 (uvrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
AAA_22
UB2H
Microtub_bd
Flavi_DEAD
HEXIM
HEM4
DUF87
Motif
Other DBs
NCBI-ProteinID:
WAM34862
LinkDB
All DBs
Position
1149705..1151690
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AA seq
661 aa
AA seq
DB search
MKKFKLVSDFKPTGDQPRAIEMLTEGILKGERFQTLLGVTGSGKTFTMAKVIENVQRPTL
VLAHNKTLAAQLCSEFREFFPENAVEFFVSYYDYYQPEAYIPETDTYIEKDSSINDEIDK
LRHSATSALFERRDVIIVASVSCIYSLGSPEDYLNLTLSLRPGMTKDRDEVIRELIRMQY
ERNDIDFRRGRFRVRGDVLEIFPASTTDRAIRVEFFGDEIERITEFDVLTGEIIGRRNHV
AIFPASHYVTTSEKLRRAIKSIEEELEQRLQELRNMGKLVEAQRLEQRTRYDIEMLQEMG
FCKGIENYSRHLTGRPPGSPPYTLLDYFPKDFIMFIDESHVTIPQVRAMYNGDRARKDSL
VEYGFRLPSAYDNRPLTFEEFEEKLNQVIFVSATPGPYELKKSSRVVEQIIRPTGLVDPE
IEVHPVKGQIDHLIGEIRKRVEKNQRVLITTLTKKMAESLTDYLKDAGIRVRYMHSDIDT
IERMQIIRDLRLGKFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGRA
ARNVDGKVIMYADRITNAMKKAIEETNRRRKIQIEYNQKHGIVPQTVRKGIRQIIEATIS
VAEEEEKYESIEKDILNNMSKQEIEEYIKELEQQMKKLAIELEFEKAAKIRDKIFELKKL
L
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaatttaaacttgtttcagatttcaagccgacaggcgaccaacccagagctatt
gaaatgctcactgaaggtattctaaaaggtgaaagatttcagaccttgcttggcgttacc
ggctcaggtaagacatttacaatggccaaggtaatagaaaatgttcaaaggcccactttg
gtcctggcacataataaaacgctggctgctcagctttgcagtgagttcagagagtttttt
cctgaaaatgctgtagagttttttgtaagctattatgattattaccagccagaagcttat
atacccgagacagacacatatattgaaaaggactcctccatcaatgatgaaatagataaa
ctgcgacactctgcgacctctgctttatttgaaagaagagatgtaataatcgtagcaagt
gtctcatgtatttatagcctgggtagtccagaggactacttaaatttaacactgtcattg
aggcccgggatgacgaaagatagagatgaagtgataagagagcttattagaatgcaatat
gaaaggaatgacattgattttagaagaggcaggtttagagtacgtggagatgtgcttgaa
atattccctgcatcaactacagacagagcaatcagagtagaattttttggagatgaaata
gagagaatcacagagtttgatgtgttaaccggtgagataattggaagaagaaatcatgtt
gcaatattcccagcatcacactatgtaacaacctctgagaagctaagaagagctattaaa
agtattgaagaggaacttgaacaaagacttcaagagctaagaaatatgggtaagcttgtc
gaagcgcaaaggcttgagcaaaggacacgatacgacatagagatgcttcaggaaatgggc
ttttgtaaggggatagaaaactactcaagacatttgactggcagaccacccggaagtcct
ccttataccttgcttgattattttccaaaagattttataatgttcattgatgaatcgcat
gttacaattcctcaggtaagggctatgtataacggtgacagggcaagaaaagattcactt
gtggaatacggctttagactaccatctgcttatgacaatcgccctcttacatttgaggag
tttgaagaaaaactcaaccaggttatatttgtaagtgcaacaccgggtccttatgaactc
aagaaatcctcaagagttgttgaacagattataagacccacagggcttgtcgacccagaa
attgaggtgcatcctgtcaaagggcaaattgaccatttgattggcgagataagaaaaaga
gtggagaagaaccagagggttttgattacaacacttacaaagaagatggcagaaagtctt
acagattacttgaaagatgcaggaataagagtgaggtatatgcactcggatattgacaca
atagagcgtatgcagataataagggatttgagacttggaaagtttgacgttttagtgggg
ataaacttgcttcgtgaagggcttgatttacctgaagtgtcacttgttgccattctggat
gccgacaaagaaggatttttgcgatcagagacctcacttattcagacaattggacgggct
gcacgtaacgttgatggtaaagtgattatgtacgctgacagaattacgaatgctatgaaa
aaggctattgaagagacgaacaggcgaagaaagattcaaatagagtacaatcagaagcat
gggatagtgcctcagactgtaagaaagggaataagacagattattgaagccactatttct
gttgcagaagaggaagaaaagtatgaaagtatagaaaaagacattttaaataacatgtct
aaacaggaaatagaagaatatataaaagagcttgaacagcaaatgaagaaattggcaata
gaacttgagtttgaaaaagcagctaagataagagataaaatattcgaattaaagaagcta
ctttag
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