Caldicellulosiruptor morganii: OTK00_001647
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Entry
OTK00_001647 CDS
T08774
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
cmor
Caldicellulosiruptor morganii
Pathway
cmor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OTK00_001647 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmor03021
]
OTK00_001647 (rho)
03019 Messenger RNA biogenesis [BR:
cmor03019
]
OTK00_001647 (rho)
Transcription machinery [BR:
cmor03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
OTK00_001647 (rho)
Messenger RNA biogenesis [BR:
cmor03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
OTK00_001647 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_22
TEP1_CUB2
AAA
NACHT
AAA_25
AAA_18
Nuc_rec_co-act
Motif
Other DBs
NCBI-ProteinID:
WAM33172
LinkDB
All DBs
Position
complement(1648877..1650532)
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AA seq
551 aa
AA seq
DB search
MPGSVEEFLSGKSIIELREIAKSLGIQKYSLLKKNQLIEAIKDFIGADKQNTQIIEGMEK
KEKKKRGRKKKSELIQEQAAAAIEVQAGETKEIENKEKFDINETAVEQEFETSRIDEKAV
EEIDKKENQKLQEKVEPEDKKEEEKKIVELKEKKDEKMLFEIPPELKELEGKVEIGGIGE
GVLEIIYEPGGGGGYGFLRDDSFMPGPNDIYVSPSQIRKFNLKTGDKIRGPIRLPKENEK
FAGLLYVQSVNDMKPEEVAKRIPFEDLTPIFPNKRIILENKKEPNDLAVRLIDLIAPIGR
GQRGLIVAPPKAGKTTLLKKIANSILTNYNDLHLIVLLIDERPEEVTDMQDSIKAEIHYS
TFDETPEHHIKVAEMVLERAMRLVECKKDVVILLDSLTRLARAYNLVEPPSGRTLSGGLD
PNALHKPKKFFGAARNLKEGGSLTILATALIETGSRMDDVIYEEFKGTGNMELHLDRKLS
EKRIFPAIDINKSGTRREELLLSEEEKAAVDAIRRALSNLGTAETTERIINSLAKTKSNE
EFVKTILKNLL
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
gtgcctgggtctgtagaagaatttttaagtgggaagtcgataattgaacttagagaaatt
gccaaaagtcttggtattcaaaaatattctttgctcaaaaagaatcagctgattgaagca
attaaagattttattggtgcagataagcagaacacacaaataattgagggtatggagaaa
aaagagaagaaaaaaagagggagaaagaaaaaaagcgagctaattcaggaacaagcagcc
gcagccattgaagttcaagccggggaaaccaaagaaatagaaaataaagaaaaatttgac
ataaacgaaactgctgtagaacaggagtttgaaacatcccgtattgatgaaaaagcagta
gaagagatcgacaaaaaggagaatcaaaagcttcaagaaaaagtggaaccggaagataaa
aaggaagaggaaaagaagattgtggaattaaaagagaaaaaggatgaaaaaatgcttttt
gagattccgccggagttaaaagagctggagggtaaggttgagataggaggcataggagag
ggagttttagagattatatatgaacctggcggtggcggtggttatggttttttaagagac
gactctttcatgcctggaccaaatgatatctatgtctcaccatctcaaatcagaaagttc
aatctcaaaaccggtgacaagataagaggtccgattagattacccaaggaaaatgaaaaa
tttgcagggcttttgtatgtccagagtgtcaatgatatgaaacctgaagaggttgcaaaa
cgtataccatttgaagatttaactcccatttttccaaataaaagaattatactggaaaac
aaaaaagagcccaatgatttagcagtgagactgattgatctgatagctccaattggacgg
gggcagagaggtcttattgtcgctccaccaaaagctggtaagactactcttttaaagaaa
atagccaacagtattctgacaaactacaatgatttacatttgattgtccttttgattgac
gaaagacctgaagaggtcacagacatgcaagattccataaaagcagagattcattattct
acatttgatgaaacgccagaacaccatatcaaggttgctgagatggtgctggaaagagct
atgcgacttgttgagtgcaaaaaggatgtggttatacttttagatagtcttaccaggctt
gcccgggcttataatctggtggaaccaccatctgggagaacactttccggtggtcttgac
cccaatgctcttcacaagcccaagaagttctttggtgcggcacgaaacctgaaagaaggt
ggaagtttgaccattcttgcaacagctcttattgagacaggctcaaggatggacgatgtt
atatacgaagagttcaaaggtacaggcaacatggaacttcaccttgacagaaaactttct
gaaaagaggatattcccggcgattgatatcaacaagtccggaacacgaagagaagagctt
ttgctttctgaagaggaaaaagctgcagttgatgctatcaggagggctttgtctaatctt
gggactgctgagacaacagagagaattatcaatagcttagcaaagacaaagtcaaatgaa
gaatttgtaaagacaatattgaagaacctgttataa
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