Caldicellulosiruptor morganii: OTK00_002286
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Entry
OTK00_002286 CDS
T08774
Name
(GenBank) ATP-dependent RecD-like DNA helicase
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
cmor
Caldicellulosiruptor morganii
Pathway
cmor03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cmor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
OTK00_002286
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cmor03400
]
OTK00_002286
Enzymes [BR:
cmor01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
OTK00_002286
DNA repair and recombination proteins [BR:
cmor03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
OTK00_002286
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
HHH_RecD2
SH3_13
OB_YrrC
UvrD_C_2
AAA_11
Viral_helicase1
HHH_5
UvrD-helicase
AAA_22
AAA_24
nSTAND3
PIF1
DEAD
Helicase_RecD
SLFN-g3_helicase
NTPase_1
NPHP3_N
AAA_12
SRP54
UvrD_C
HerA_C
PhoH
AAA
T2SSE
AAA_15
AAA_29
MeaB
ATPase_2
ABC_ATPase
HHH_2
AAA_28
Thymidylate_kin
ABC_tran
TrwB_AAD_bind
RsgA_GTPase
Mg_chelatase
MIMI_R596-like_C
5_3_exonuc
AAA_16
DUF2666
Motif
Other DBs
NCBI-ProteinID:
WAM33749
LinkDB
All DBs
Position
complement(2341388..2343610)
Genome browser
AA seq
740 aa
AA seq
DB search
MLQDIKGMVSDIIYKNLENNYTVFEVLCDEEVFTAVGIVPDIAIGEKVKIYGEFYVHPVY
GQQLKVSYLEKLLPETKDEIYMYLSSGVIKGIGKKTAKKIVDTFGDDTIRVLQQEPERLL
SIRGMTPEKVERIKNMFAFQKFLKDIMTVFSQYGLSQNHAMRLFKLYGFSALGLLNENPY
FLLDVFPELDFKKVDRMALDMGIGLEDARRIQAKIINILNTGSSSEGHTCLPREKLVLLV
SKALEIEKEKTEEALLDLERVKRVVIDTIDGVEMVFLFGFYECEKFIADRIFSMLRTYED
IADIDEKISEFEKRNNIAFSNNQRKAIKMALTEGVSIITGGPGTGKTTIIKCIIDIFEQE
GKKVFLCAPTGRAAKRMQAACQKEAKTIHRLLEMTVTDSQVVFQRGPGNPLRCDVIIVDE
TSMVDSFIMNYLLAATKDTTRLILVGDKDQLPSVGAGNILKDLIRSDVVPYVRLTEVYRQ
SENSFIVLNAHRINNGEFPHLQKDSDFYFIQKDSQQDILKTVVELVTKKLPSYLSADPLR
DIQVLCPSKKGIVGMYNINRVLQQYLNPAGASKKEFVYKENTFRVGDRVMQVKNNYSLEY
TVIEGDEKGRVSTGIFNGDIGVIKDIDRAEGVMEIVFDDDKLVFYDFSLLDDLELSYAMT
VHKSQGSEFRCIVMPVVETYPILMTRNLLYTAVTRAKELVVLVGKKSALQYMIANQKEAM
RYSALYDFLRRKLKDTQLQA
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atgcttcaggatataaaaggaatggtaagtgatattatttacaaaaaccttgagaacaac
tacacagtgtttgaagttctctgcgatgaagaggtttttacagctgttggaattgttccg
gatattgcaattggcgaaaaggtgaagatatacggagagttttatgtccaccctgtttat
gggcagcagctaaaagtttcatatcttgaaaagcttttgccagagacgaaggatgagatt
tacatgtatctttcatccggagtgataaagggcataggcaaaaagactgcaaagaagatt
gttgatacctttggagatgacaccataagagttttgcagcaggaaccggagagacttctt
tctatccgtggaatgacacccgaaaaggttgaaagaataaagaatatgtttgcattccag
aagtttttgaaagacattatgacagtgttttctcagtacgggctatcgcagaatcatgct
atgagactttttaaactgtacgggttttcggcgctcgggcttttgaatgaaaatccatat
tttctgctggatgtatttcccgagcttgactttaaaaaggtggacagaatggcacttgat
atgggcattggtctggaagatgcaagaagaattcaggcaaaaattataaatattttgaac
acaggaagcagcagcgaagggcatacatgccttcccagagaaaagcttgtattgcttgtt
tcaaaggcacttgaaatagaaaaagaaaagacagaagaggcacttttagatcttgagaga
gtaaaaagggttgtgattgatacaatagatggagtggagatggtttttctttttggattt
tacgaatgtgaaaaattcattgctgacaggatattctctatgctgagaacttatgaggat
attgctgatatagatgaaaagatttctgaatttgaaaagagaaacaacatagcattttcg
aacaaccagagaaaggcaataaagatggctttgacagaaggtgtgagcataataacaggt
ggacccggcacagggaaaaccacaattataaagtgtataattgacatatttgagcaggag
ggtaaaaaggtttttctgtgcgcgccaacaggcagggcggcaaagaggatgcaggctgca
tgccagaaagaggcaaagaccatccacagacttctggagatgaccgtcacagattctcag
gttgtgttccagagaggaccgggtaatcccctcaggtgcgatgttatcatagttgatgag
acaagcatggttgatagtttcatcatgaactatcttcttgctgccacaaaagacacaaca
aggcttattcttgttggtgacaaggaccagctgccttcggttggagcagggaacatactc
aaagaccttataagaagcgatgttgtgccgtatgtgaggcttaccgaggtttacaggcag
agtgaaaacagcttcattgttctgaacgctcacaggataaacaatggcgaatttcctcac
cttcagaaagacagtgatttttatttcatccagaaagattcacagcaggacatactgaag
acagttgtcgagcttgtgacaaaaaagcttccatcttacctttcagccgaccccctgaga
gatattcaggttttatgtccgtccaaaaaagggattgttggtatgtacaatataaacagg
gtgcttcagcagtatttaaatcctgccggggcttcaaaaaaggagtttgtctataaagag
aacacattcagagttggcgacagggttatgcaggtgaagaacaactactcgcttgaatat
acagttatagaaggtgatgagaagggcagggtctcaacaggaatatttaacggtgacata
ggggttataaaagacattgacagggcagagggtgttatggagattgtatttgatgatgac
aagcttgtgttttatgacttttcgcttcttgatgacttagagctttcgtatgccatgact
gttcacaaatcgcagggctctgagttcaggtgcattgtaatgccggttgttgagacctac
ccaattttgatgacaagaaaccttttgtacacagcagtcacgcgcgcaaaagagcttgtt
gtgctggtgggcaaaaaaagcgccctgcagtacatgatagcaaaccagaaagaagctatg
cgatattcagcactttacgactttttaagaaggaagctaaaagatacgcaactgcaagct
tga
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