Cucurbita moschata (crookneck pumpkin): 111430023
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Entry
111430023 CDS
T05248
Name
(RefSeq) SWI/SNF complex subunit SWI3A isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
111430023
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmos03021
]
111430023
03036 Chromosome and associated proteins [BR:
cmos03036
]
111430023
Transcription machinery [BR:
cmos03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
111430023
Chromosome and associated proteins [BR:
cmos03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
111430023
PBAF complex
111430023
GBAF(ncBAF) complex
111430023
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
ZZ
DpnI
DUF7573
Motif
Other DBs
NCBI-GeneID:
111430023
NCBI-ProteinID:
XP_022921896
UniProt:
A0A6J1E2M6
LinkDB
All DBs
Position
Unknown
AA seq
564 aa
AA seq
DB search
MDTSQREPSDRRVPDEPELDLYTIPSHSSWFSWDEIHETEKSALKEFFDGSSISRTPRIY
KEYRDFIINKYREEPSSRLTFTDIRKSLVGDVNLLHKVFIFLETWGLINFAATSDGNDSE
EVVDGDSPTIKIEEGVPNGIRVGAMPNSVKPISAPPVVEDSSIVNGSGFKSPPLTSYSDV
FTDLLKLKILVCGNCGQSCGSRYHQCAKDGYLICENCFNDKNYGEQRLLEDFELKTKEFI
EDSVNTGAVWTEAETLLLLESFLKHGDDWELVAQNVKTKTKLDCILKLVELPFGDFLLRS
EAQRNEARGPNNNVTSEKEIRLSPSNNQEVAGSEDQDINEDKDEENQGPPKRQCTASVPD
TSSSLMKQVALISSMVGPHIMAAAATASVAALCDENLYPKEVFDDQDFFVPNGLCSAAST
ESNHEVERILDNDDSVPKEERPQPAICTSPSGDMMVEDKDDIPLILRIRAATATALGAAA
AHAKLLADQEEREIEYLLAIMIETQMKKTQRKIKHLEDLEEIMEAEYPVVEELEDKLLME
RVSVLQSAFDLGISRWKDYPSVRS
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atggacacctcacagcgggaaccgagtgatagacgagttccagacgaaccagagctcgat
ctgtacaccattccaagtcactccagttggttttcgtgggatgaaattcacgaaactgag
aagtctgctttgaaggagttctttgatggaagctcaatatcaagaacaccgcgcatatac
aaagagtatagagattttattatcaataagtacagggaagagccttcaagcaggcttaca
ttcaccgacattcgtaagtcactcgtgggggatgttaatttgcttcataaggtgtttatt
ttcttggagacatgggggttgatcaactttgccgcaacttcggatggtaacgattccgag
gaggtggtagatggagacagccctacaattaagattgaagagggggttcccaatgggatt
cgtgtgggagcaatgcccaattcggtcaagccaatttcagcaccacctgttgtggaagac
agttctatcgttaatgggagcgggtttaaatcgccccctctgacttcttattcagatgtt
ttcactgacttgttgaagctgaagattttagtgtgtgggaattgtggtcagtcgtgtgga
tctcgataccatcaatgcgccaaggatggttatttaatttgcgaaaattgtttcaatgat
aaaaattacggggagcagaggcttttggaagattttgagttgaagaccaaggagttcatt
gaagatagcgttaataccggagctgtgtggactgaggctgaaactctgcttcttttggaa
tcctttttgaagcatggagatgactgggaactcgttgctcaaaatgttaaaaccaagact
aaattggattgtatattgaagctcgtggagttgccttttggggacttcttgttacgttct
gaagctcaaaggaacgaggctagaggtcccaataacaacgtcaccagtgaaaaagaaatt
agactctctccatctaacaatcaggaggttgccggaagtgaagaccaggacataaatgag
gacaaagatgaagagaatcaaggtcctcccaagcgacagtgcactgcttctgttccagat
acgagcagttctctgatgaaacaggtagctttgatatcaagcatggttgggccacatatt
atggcggctgctgctactgcttctgttgctgcactttgtgacgaaaacttatatccgaaa
gaagtctttgatgatcaagatttttttgtacctaatggattgtgttctgcggcttccacc
gaatcaaatcatgaggttgagagaattctcgataacgatgattcagtgccgaaggaggag
aggcctcaaccagctatctgtacttccccttcaggtgatatgatggtcgaggacaaagat
gacattcctttaatcttgcgaattagagctgcaacagcaacagcacttggcgctgctgcc
gcacatgcaaaattacttgctgatcaagaagagagagaaattgaatatttgttggcgata
atgatagaaacacagatgaagaagacgcaacgcaaaattaagcatcttgaagatctggag
gaaataatggaagcagaataccctgtggttgaggagctagaagataaactgttgatggag
cgggttagtgtgttgcaatctgcatttgatcttggtatctctaggtggaaggattaccct
tctgtgagatcttga
DBGET
integrated database retrieval system
