Cucurbita moschata (crookneck pumpkin): 111431113
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Entry
111431113 CDS
T05248
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03013
Nucleocytoplasmic transport
cmos03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
111431113
03015 mRNA surveillance pathway
111431113
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmos03019
]
111431113
Enzymes [BR:
cmos01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
111431113
5.6.2.5 RNA 5'-3' helicase
111431113
Messenger RNA biogenesis [BR:
cmos03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
111431113
mRNA cycle factors
Common to processing body (P body) and stress granule
111431113
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
NPHP3_N
Helicase_RecD
UvrD-helicase
nSTAND3
ATPase
PhoH
SRP54
AAA_16
AAA_22
Ribosomal_S13_N
AAA_32
AAA_25
AAA
Motif
Other DBs
NCBI-GeneID:
111431113
NCBI-ProteinID:
XP_022923405
UniProt:
A0A6J1E6Q5
LinkDB
All DBs
Position
Unknown
AA seq
1269 aa
AA seq
DB search
MDSQQNNLFETASQPDTGNDAYTFLEFNTQGEDFDYPEFRDPIRSPVAWPTPSDSLADHT
DRGGGSDHQSDASPVSAAPGSATKGRTGGGSGNSGGNNQMVDALAAGMSGLTFEDTGDDD
NYEFGKGNFTEHACRYCGISNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKE
VCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWDLS
QWCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINKIEELWKTNPDASLEDLEKPGVDD
EPQPVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTVRWDIGLNKKRIAYFVF
PKEDNELRLVPGDELRLRYSGDAAHPAWYSVGHVIKLTAQEEVALELRASQGVPVDVVHG
FSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGL
PELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVD
QLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSERSELHKLQQLKDEQGE
LSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLSNFRFRQVLIDESTQATEPEC
LIPLVLGAKQAVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMHP
SLSEFPSNSFYEGTLQNGVTINERQSTGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLN
RTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASV
DSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWN
SLLTHYKEHECLVEGPLNNLKQSMIQFQKPKKIYNDRRLFFAGGPGVVPNDNFGPVAPSG
PSADRRSSRGRGSYFPPHLPNGAQKPGVHASGYPMPRVPLPSFHGGPPHPYGIPTRGAVH
GPVGAVPHVPQPGSRGFGAGRGNVGAPIGSQLPNQQGSQQNIGNLGSTFNFPGLESPNSQ
PSVGGPLSQLGFVNNMPVQPPTQTFRDGYSMGGISQDFLGDDFKSQGSHVPYNVTDFSTQ
ASQTGYPIDYVSQGAQGGFPGSFLNQNSQSGYNRFGTGNDFMSQDYMNHGSQGLFTQVGF
SDPSLDESSQSHYNVTNTNSLQSQGMMNSLYSQPFAHYNTQPSTQQAPPQQQQPQQGQSS
QNQKIHFSG
NT seq
3810 nt
NT seq
+upstream
nt +downstream
nt
atggattcgcagcagaacaatttgtttgaaacggcatctcaacctgatacggggaacgac
gcgtacacatttcttgagttcaacacacagggagaagacttcgattaccctgaatttcgc
gaccctattaggtcccctgtagcgtggccgactccttccgattcgttagcggatcatacg
gaccgtggtggtgggtcggatcatcagtctgatgcatctccggtttcggctgcaccggga
agtgccacgaaaggccggactggaggaggttcagggaatagcggcggtaataatcaaatg
gttgacgcattggctgccgggatgagtgggttgacgtttgaggatacgggggatgatgat
aattatgagtttgggaagggaaatttcacggagcatgcttgtaggtattgtgggatttcg
aatccggcttgcgttgtgaggtgtaacgtgccgtcatgccgtaagtggttctgcaattcg
cgagggaacacgtctgggtcccatattgtaaatcacctggtccgggcaaaacataaagaa
gtttgtcttcacaaagacagtcctctgggagaaacaattctcgagtgttacaattgcggg
tgccgaaatgtattcctccttggatttatttctgcaaagacagaaagtgtggttgttcta
ctctgtagggaaccttgcttgagtgtaaatgctcttaaggatatgaattgggacttgagt
cagtggtgccctctaatcgatgataggtgctttttgcagtggctggttaagattccttct
gagcaagagcagttgagggcacggcaaattagtgcccaacaaataaataaaattgaggaa
ctttggaagacaaacccagatgcatctcttgaagatcttgaaaaacctggtgtggatgat
gaaccacagcccgtagcattaaaatatgaagatgcttatcagtatcaaaatgtatttgca
cctcttatcaagcttgaagccgactacgataaaatgatgaaagaatctcaaagcaaggat
aatgtgactgtacgttgggacattggtcttaacaagaagagaatagcttattttgtcttc
ccaaaggaggacaatgagttgcgtcttgtgcccggagatgagttgaggttacgctattct
ggtgatgcagctcatccagcttggtattctgttggacatgtgatcaagttaactgcacag
gaagaggttgcactcgagctacgtgctagccagggggttccagttgatgtggtccatggt
tttagtgttgattttgtgtggaagagtactagtttcgaccgaatgcagggagctatgaag
acatttgctgttgatgagaccagtgttagtggttatatctaccatcacttattaggacac
gaagtggaggttcagatggttcgcaatacacttccacgtcgttttggtgctcctggtctc
ccagaactcaatgcatctcaagtttttgcagtaaaaagtgttcttcagaagccaataagc
ttgattcagggccccccgggtactgggaaaactgtaacttctgctgccatagtgtatcat
atggccaaacaaggccaagggcaggtgctggtctgtgcccctagtaatgtggctgtggac
caactggcagagaagataagtgcaactgggttaaaggttgttaggctatgtgcaaaatca
agagaagctgtaagttctcctgtggaacacttgacccttcactatcaggttcgacatctt
gacacatcagaaagaagtgaacttcataagttgcaacaattgaaagatgaacaaggggag
ctgtctagcagtgatgagaaaaaatataaagcccttaagagagcaacagagagggaaatt
tcccagagtgcagatgttatttgttgtacatgtgtcggtgctggagatcctcgcctgtca
aattttagatttcgccaggttcttatcgatgagtctactcaggcaacagaacctgaatgt
cttattcctcttgttcttggagcaaagcaggctgttcttgttggtgaccattgccaactg
ggacctgtcattatgtgcaaaaaagcagcacgtgcagggctggctcaatccctttttgaa
cgtcttgttcttcttggtgtgaagccaattagattgcaggtccaatatcgtatgcaccca
tccctttctgaatttccttccaacagcttctatgagggcacactacaaaatggagttaca
atcaatgaaaggcaatcgacaggcatcgactttccatggccagttcccaaccgtccaatg
ttcttctatgttcagatgggacaagaggagataagtgccagtggaacttcctacctaaat
aggaccgaggcagcaaatgtagaaaaaattgtgaccactttcttaagaagtggtgtagtc
cctagtcagattggagttattacaccatatgagggtcaacgagcttacattgtgaactat
atgtcaagaaatggtgctctcagacagcaactttacaaggaaattgaggttgcaagtgtg
gattcatttcaaggaagggaaaaagattacatcatattgtcatgcgtaaggagtaacgaa
catcagggcattggattccttaacgatcctcgcaggctcaatgtggctttaacacgagct
cgatatggtattgtcattcttggaaacccaaaggttttgagtaaacaacctctgtggaat
agcttgttgacacattacaaggaacatgaatgcttggttgagggtcctttgaataacttg
aaacaaagcatgattcagtttcagaagcctaaaaagatatacaatgatcggcgtcttttc
tttgctggtgggcctggagttgtccccaatgataattttgggcctgttgccccatctggt
cccagtgctgatagaagaagtagtcgtggtagaggttcgtactttcctcctcacctaccg
aatggtgcgcaaaagcctggagtgcatgcatctggttatcccatgccacgagttcctctt
ccctcgtttcatggtggtcccccgcatccatatggaattccaactcgtggagctgtacat
ggaccagttggtgctgttcctcatgttcctcaaccaggaagtagaggttttggggcaggg
cggggaaatgttggtgctcctattggtagtcagcttccaaatcagcaaggctctcaacaa
aatattggaaatcttggctccacttttaactttcctggtttggagagtcccaatagccaa
ccatcagtgggtggtccgttgtcgcagcttgggtttgttaacaatatgcctgttcagccg
cctactcaaacatttcgtgatggatactccatgggaggaatttctcaggacttcttgggc
gatgactttaaaagccagggatcacatgttccatacaatgttactgatttctccactcag
gcctctcaaactggatatcccattgattatgttagtcaaggagcacagggtggctttcca
gggagcttcctgaaccagaattctcaatcgggatataaccgttttggaacaggaaatgat
ttcatgtcgcaggactacatgaaccatggttcacaaggtttatttactcaagttggtttc
agcgatccctcactagatgaatcctcccaaagtcactataacgtgacaaatacaaactca
ctacagtctcagggcatgatgaattctctctactcccagccctttgcacattacaataca
cagccttcgacccagcaggccccaccacagcagcagcagcctcagcagggccagagctct
caaaatcagaaaattcactttagtggttga
DBGET
integrated database retrieval system
