KEGG   Cucurbita moschata (crookneck pumpkin): 111431154
Entry
111431154         CDS       T05248                                 
Name
(RefSeq) replication factor C subunit 2
  KO
K10755  replication factor C subunit 2/4
Organism
cmos  Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03030  DNA replication
cmos03410  Base excision repair
cmos03420  Nucleotide excision repair
cmos03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cmos00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    111431154
   03410 Base excision repair
    111431154
   03420 Nucleotide excision repair
    111431154
   03430 Mismatch repair
    111431154
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cmos03032]
    111431154
   03036 Chromosome and associated proteins [BR:cmos03036]
    111431154
   03400 DNA repair and recombination proteins [BR:cmos03400]
    111431154
DNA replication proteins [BR:cmos03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    111431154
  DNA Replication Termination Factors
   ELG1-RFC complex
    111431154
Chromosome and associated proteins [BR:cmos03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    111431154
DNA repair and recombination proteins [BR:cmos03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     111431154
  Check point factors
   HRAD17(Rad24)-RFC complex
    111431154
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 nSTAND_NTPase5 AAA_14 AAA_22 AAA_lid_RFC1 Rad17 Mg_chelatase AAA_16 Viral_helicase1 RuvB_N AAA_11 DNAX_ATPase_lid RCF1-5-like_lid AAA_28 AAA_19 nSTAND3 AAA_assoc_2 AAA_30 AAA_25 AAA_5 RNA_helicase ABC_tran T2SSE SLFN-g3_helicase bpMoxR NTPase_1 AAA_24 IstB_IS21 AAA_18 MeaB AAA_29 AAA_3 AAA_7 DO-GTPase1 DNA_pol3_delta_C
Other DBs
NCBI-GeneID: 111431154
NCBI-ProteinID: XP_022923473
UniProt: A0A6J1E9R2
LinkDB
Position
Unknown
AA seq 332 aa
MASSSGSSSSSYDMPWVEKYRPSKVADIVGNEEAVSRLQVIARDGNMPNFILSGPPGTGK
TTSILALAHELLGPNYKDGVLELNASDERGIDVVRNKIKMFAQKKVTLPPGRHKVVILDE
ADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRL
MVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPLH
VKNMVRNVLEGKFDDACAALKQLHDMGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGF
AHMRICDGVGSYLQLCGLLAKLSIVRETAKAP
NT seq 999 nt   +upstreamnt  +downstreamnt
atggcgtcttcttcaggaagcagcagcagcagctacgacatgccatgggtggagaagtac
aggcccagcaaggtcgctgacattgtaggcaacgaagaagcagtttctcggctccaagtc
attgctcgcgacggcaacatgcccaatttcatattatctggtccgcctggaactgggaag
acaaccagtattctggctcttgctcacgagcttttgggaccaaattacaaggatggtgtt
ctggagcttaatgcatcagatgaaaggggaatcgacgttgtgaggaacaaaatcaagatg
tttgctcaaaagaaagtaaccttgcctcctggtcgacacaaagtggtaatattggacgaa
gctgacagcatgacaactggagcacaacaagctttgaggcgtacaatggaaatatattcg
aacacaacacgttttgcacttgcatgtaatacctcctcaaaaattatcgagcctattcag
agtagatgtgcaattgtccgattttcaagattaacagatcaagagattcttgggcgcctt
atggtggtacttcaagcagaaaaggtaccctatgttccagaaggtcttgaagcaatcatt
ttcaccgctgatggtgatatgaggcaagcgctgaataatttgcaagcaacatatagtgga
ttccgctttgtaaaccaggacaatgttttcaaggtttgcgatcaaccgcatccgctgcat
gttaagaacatggtgcgtaacgtgcttgaaggtaaatttgacgatgcttgtgcagctctg
aagcaactccacgacatgggctattctcccactgacataataaccactcttttccgtatt
attaagaactatgatatggctgagtatctgaaactggaattcatgaaggaaactgggttt
gctcatatgagaatttgtgatggagttgggtcttatctgcagctatgcggtcttttggcc
aagctttccattgttcgtgagactgcgaaagcgccatga

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