Cucurbita moschata (crookneck pumpkin): 111432166
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Entry
111432166 CDS
T05248
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111432166
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmos03019
]
111432166
Messenger RNA biogenesis [BR:
cmos03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111432166
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
111432166
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
111432166
NCBI-ProteinID:
XP_022924762
UniProt:
A0A6J1E9W5
LinkDB
All DBs
Position
Unknown
AA seq
2373 aa
AA seq
DB search
MMFSATTSSQIRFLLHSLTESNAESILNELCEFIDCGVEGSFILLRTCLDHFTSHGTDLD
NPLLRLVVSSVFKHLLDRPNFSTIFCESLKTRDINQVILENISNLLNLSMCERIGVGLAV
SDSENLDTRTCGNNFCITQIEELCANAVSMDSTQQIQDIIMFLQRSEGLSKHLDSFMQML
SLVQLKDVTEFVLSPLLSDELREEKILRNVNLSHESRDNDFDSILAEMEKEMSMGDIMKE
LGYGCTVNATQCKEIVSLFLPLTEITISKILGMIARNHTGLEDSRNLYTTFSLALGCSAL
SDLPSLNSWDVDVLIDTVKQLAPSIDWIRVMENLDHEGFYIPNEEAFTFFMSVYRRACQD
TFPLHTICGSVWKNMEGQISFLKHAVSAPPEIFTFAHSGRQLAYIDGLHGHKLQLGHTNQ
AWMCLDLLDILCELAERGHARSVQSMLEFPLKNWPELLLLGMAHTNTAYNLLQFEVSFSV
FPLMLRNPLGSDLIFQLWHVNLNLVLRGFVDAQNSDPDCMVRIVEICQELKILLSVLDTI
PPSCSIRLAAIASRQECLDLEKWLSNSLKTYKDVFFEECLKFLKGIHYGGSQDFTTKPFY
PSNAISNIYLDTASTFLKVLRSNVGTTASAKLFEEMEKLHDAVLESNPKLQNGDAPDAPG
AEGGYTDDIEAEANSYFQQMFSGQLTIEAMVQMLSRYKESSVKREQSIFECMIANLFEEY
RFFPKYPERQLKIAAVLFGSVIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTKAVE
QFVDRLIEWPQYCNHILQISHLRSTHVELVAFIEQALLRLSAGHSDSDATAGNVELQQKH
ETAMDDRLKVIGSSVNDVKQFLSSVGQTSIQPVGDAPTNQKNTISTPAVLTSASGFVRPS
RGAASTRFGSALNIETLVAAAEKRETPLEAPASDVQDKISFMINNISLANLEAKAKEFSE
ILKEQFFPWFAQYMVMKRASIEPNFHDLYLKFLDRVNSKALSKEIVQATYENCKVLLGSE
LIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKI
LEPCQSSLAYQPPNPWTMGILGLLAEIYSMPNLKMNLKFDIEVLFKNLSVDMKEITPTSL
LKDRKREVEGNPDFSNKDVGASQTQMVAEAKPSIMSSLNQVELPLEVATPSNSGNHTHLL
SQYVPPLHLSSGTLMEDEKLAALGLSDQLPTAPGLLQATTSPSPFSTNQLPAGIPNIGSL
VVINQKLNSLGLHIHFQRAVPIAMDRAVKEIVSGIVQRSVSIATQTTKELVLKDYAMESD
ETRIFNAAHLMVASLAGCLAHVTCKEPLRGSISSQLRSSLQNLGVASDLLEQAVQLVTND
NLDLGCAIIEQAATDKAIQTIDGEIAQQLSLRRKHREGVNTTFFDTGMYAQGPLGVVPEA
LRPKPGHLSISQQRVYEDFVRLPLQNQNSQAAQSTGSSITASGTGLSSQFGLSSGQLNSG
YTSGLVAGLEGGSRSLDDAVDPTCVPQLSATPGHIAADGVGVRGPENDLVVASFPLAAST
PELPAADTSDNIKEPGSSSQPLSSPITTDRLATTMSEPSLTTRDALDKFQVISQKLEALV
SNEARETDFQGVIAEVPEIILRCVSRDEAALAVAQKVFKVLYDNASNTFHVGAHLAILIA
IRDVCKLVVKELTSWVIYSEEERKYNKDITLGLIRSELLNLAEYNVHMAKLIDGGRNKAA
TEFVISLLQTLVVEESSVISELHNLVDALAKVAAKPGSSEPLQQLVEIIKNPSASTAAIS
GVNVGKEDKARLARDKKAPGHSTANREDSSFLESEDPVGFRDQVSILFAEWYRICELPGA
NEAAFNHFILQLHQNGLLKGDDMTDRFFRLLTEISVAHCLSSEVINSGALQSPQQIQNLS
FLAIDIYAKLVFSILKGSGKTSLLSRILAVTVRFIQKDAEEKKASFNPRPYFRLFINWLP
DLGCLEPIVDGANFQILTAFANAFHALHPLKIPAFSYAWLELVSHRSFMPKMLTGNNQKG
WPYIQRLLVDVFQFMEPFLRNAELGPPVYFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDV
IPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLAEINQSPRILSEVDGALKSKQMKAD
VDEYLKTRQQGSSFLADLKQKLLLPPIEAASAGTRYNVPLINSLVLYVGMQAIQQLQARS
PHAQSTANTVTLAVFLVGAALDIFQTLIVELDTEGRYLFLNAVANQLRYPNTHTHYFSFV
LLYLFAESTQEIIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPRYNFWNRSFIRCAP
DIERLFESVSRSCGGPKSADENMVQNWVPDTAH
NT seq
7122 nt
NT seq
+upstream
nt +downstream
nt
atgatgttttcggctacgacgtcgtctcagattcgcttcctcctccacagcttgactgaa
tctaatgctgaatccattctcaacgagctctgcgagttcattgactgtggagttgaagga
agcttcatactgctcagaacttgtttggatcatttcactagtcatgggacagatttggac
aacccgctgttgcgactagttgtttcttctgttttcaagcatctcttggacagacccaat
tttagtacaatattttgcgagtcccttaaaactagagatatcaaccaagttattctcgag
aacatctcgaatctgttaaacttgtcaatgtgtgaaagaattggagttggtctcgctgtt
tcagattctgaaaatctcgatacaaggacttgtggaaataacttctgcattactcagatt
gaggaactttgtgctaatgctgtatctatggattccactcagcaaattcaggatattatc
atgttcctccaacggtctgaagggctctcaaagcatttagattccttcatgcaaatgcta
tctttggtgcagttaaaagatgttacagagtttgttttgtcaccgctgctttcagatgaa
ttgcgagaggagaaaattttaaggaatgtaaatctgtcacatgagtcccgcgataatgat
tttgattccatcttagccgaaatggagaaggaaatgagcatgggagatattatgaaggaa
ctgggttatggatgcacagtcaatgctacacaatgcaaagagatcgtgtccctcttcttg
ccgctgacagagattactatctctaagatacttggcatgatagctcgcaatcacactggt
cttgaggacagtcgaaatttatatacaacttttagtctagcattgggttgcagcgccttg
tctgatcttccatccttgaactcatgggatgtggatgttctcatagacacagtgaagcaa
cttgcacctagcattgactggataagagtaatggaaaatctggatcacgagggtttttac
attcctaatgaggaagcattcacatttttcatgtctgtatatagacgtgcatgccaggac
acgtttcctcttcatactatttgtggttcggtttggaagaatatggagggtcagatttcc
ttccttaaacatgctgtgtcggcaccacctgaaatatttacatttgctcactctgggaga
cagctggcttatattgatggactgcatggccataagcttcagcttggacatacaaatcaa
gcatggatgtgtcttgatcttttggatatactgtgtgaacttgctgagagaggtcatgct
agatctgtgcaatcaatgctggagtttcctcttaaaaactggcctgagctattgctactt
gggatggcacatactaacaccgcatacaatcttctccagttcgaagtttctttttcagtc
ttcccattgatgttaagaaatcctcttggtagtgatttaatctttcagctatggcatgtt
aaccttaatctggtgttacggggatttgtggatgctcaaaacagtgatccagattgcatg
gttaggatagttgaaatctgccaagaattgaagatacttttgtcagtactagatacgatt
cctccttcctgcagtataagattagctgctattgcttcacgacaggaatgtttagacctt
gagaagtggttgagtaacagtttgaaaacatacaaagatgtattttttgaggaatgcctc
aagttcttaaaagggattcattatgggggatctcaagattttacaaccaaacctttttat
ccttccaatgcgatttcaaatatttatctcgacactgcttctactttcttgaaggttcta
agatctaatgtaggtactactgcttctgctaaactatttgaggaaatggagaagttgcat
gatgccgttctggagtcgaacccaaagctgcaaaacggtgatgctccagatgcgcctgga
gcagaaggaggatatacagatgacattgaggccgaagctaattcctacttccaacaaatg
ttttccggtcagttgaccattgaagcgatggttcaaatgctttctcggtacaaggaatct
tcagttaaaagggaacaatcaattttcgaatgcatgattgcaaatctgtttgaggagtat
agattcttcccgaaatatcctgaaagacagctgaaaattgcggcagttctctttggctct
gttattaagcatcagcttgtaactcaccttactcttgggattgcattgcgtggtgtcctt
gatgcacttcgtaaacctgcagattcaaaaatgtttgtgtttggtaccaaggctgtagag
cagtttgtggatcgtttgattgagtggccgcagtactgcaatcatattctgcaaatatca
catttacgaagcacacatgtggaacttgttgctttcattgaacaggctcttctgaggcta
tctgcaggccattctgattctgatgctactgcaggaaatgtggagctacaacaaaaacat
gaaactgccatggatgatcgacttaaagtcattggatcatcagtcaatgatgtaaaacaa
tttttatcttctgtggggcaaacttcaattcaacccgtaggtgatgctcctacaaatcaa
aagaatacaatcagtactccagctgtgttgacttctgcctctggttttgtccgtccttca
cggggggctgcttctaccaggtttggttcagctttgaatattgaaacacttgttgctgcg
gctgagaaaagagaaactcctctagaggctcctgcatcggatgtacaggataagatttca
tttatgattaataatatttcacttgctaatcttgaagccaaagcaaaagaattttctgag
attttgaaggagcagttttttccctggtttgctcagtatatggtcatgaagagggctagc
attgagccaaatttccatgacttgtatttgaagtttctggaccgagttaattcaaaagct
ttgagtaaagagattgttcaggctacttacgagaactgcaaggttctgttaggatcagag
cttataaaatcaagctcagaagaacgttcactgctgaagaatttgggaagctggcttggg
aaactaacaattggcaggaatcaagtattgcgagctcgtgaaatagatccaaaatctttg
ataattgaggcatatgaaaaagggttaatgattgctgtaataccatttacttctaagatt
cttgaaccatgtcaaagtagtttagcataccaacccccaaacccttggaccatgggcatt
cttggactactggcagagatttattcaatgcctaacttgaaaatgaacctgaagtttgac
attgaggttctgtttaagaatcttagtgtggatatgaaagaaataacgccaacttctctt
cttaaagaccggaagagagaagttgaaggtaatcctgatttttctaataaggacgttgga
gcatctcagacgcagatggtagccgaagcaaagcccagcataatgtcttctttaaatcaa
gtggagcttccactggaggttgcaaccccatcgaattctggaaatcacactcacctgtta
tcgcagtacgttcccccacttcatctttcttctggcacattaatggaagacgaaaagctt
gctgcgctgggcttgtctgatcagcttcctactgcccctggactcttacaagctacaacg
tcgccatcaccattctcaaccaatcagcttcctgcgggtattcctaatataggaagtctt
gttgtgatcaaccagaagcttaatagtttgggattgcacattcattttcagagagcagtt
ccaattgcaatggatagagctgtcaaagagatcgtttctggtattgtgcagcgtagtgtc
tctatagccacccaaacaacaaaggaactggttttgaaggattatgccatggaatcagat
gagacccgaatatttaatgcagcgcatttgatggttgctagtctggccggatgtctagca
cacgtgacttgcaaggaacctttacgaggttcaatatcaagtcaactcagaagttctctc
cagaatttgggcgttgccagtgatctgcttgagcaagctgttcagcttgttacaaatgat
aaccttgatcttggttgtgccataattgaacaggctgctacagataaggctatacaaacc
attgacggtgaaatagcccaacagctgtctttaagaaggaagcatagagagggtgttaat
acaaccttttttgacactggtatgtacgcacaaggacctcttggtgttgtgcctgaggct
ctccgtcccaagccaggacatctgtccatttcacaacagcgagtttatgaggattttgtt
aggcttcccttgcaaaatcaaaatagccaagctgcacagtctactggttcttcaattaca
gctagtggtactggtttgagtagtcaatttggtttgtcatcgggacaactgaactcagga
tacacatctggacttgttgctggacttgaaggaggatctcggtctctggatgatgctgta
gaccctacctgtgtgccccaactaagtgcaactccaggacatattgctgctgatggtgtt
ggcgtgcgaggtccagaaaatgatttggtcgttgcttctttccctttggctgcatcaacc
cctgagctgcctgcagctgatacctctgacaatataaaggaacctggatcttcttcccaa
ccattgtcctcacctatcacaactgatcgtcttgcaactactatgtcagaaccctcactt
accaccagagatgcattggataaattccaagttatttcacagaagttggaggctttggtt
agtaatgaggctcgggaaactgacttccagggtgtcattgccgaggttcctgagatcata
ctaagatgtgtaagtcgggatgaagctgctcttgctgtggcgcaaaaggtgtttaaagtt
ttatacgacaatgcatcaaacacttttcatgttggtgcccatcttgccattctgattgcc
attcgcgatgtttgcaagctagttgtaaaggaacttactagctgggtgatttactctgag
gaagagcggaagtacaacaaggacattactcttggccttattcgcagtgaactactaaat
cttgcagaatataatgttcatatggcgaaactaattgatggaggcaggaataaggccgca
acagagtttgtcatatccctcctccaaacattggttgtggaagaatcaagtgttatttcc
gaacttcacaatcttgttgatgcattagctaaggtagctgcaaaacctggatcttcagag
cctttgcaacaactggttgagataatcaagaatccatctgctagtacagctgctatatct
ggggttaacgttgggaaagaggataaggctagacttgccagagacaaaaaggctcctgga
cattccacagcaaacagagaagattctagttttctcgagtctgaagatccagttggtttt
cgtgatcaggtatcgatactatttgctgaatggtaccgaatatgtgagctacccggtgct
aatgaagccgcatttaaccatttcatattacaattacatcagaatgggcttctgaaaggg
gatgatatgacggatcggtttttccgtctgctcacagaaatttctgtggcacattgttta
tcatctgaagtaattaattcgggtgcattacaatcaccacaacaaatacagaatctatcg
ttccttgcgatcgacatttatgccaagcttgtattttcgatcttgaagggatctggtaaa
acttctcttttatccaggattctggcggtgactgtaagattcattcagaaggatgccgaa
gagaagaaagcatcgtttaatccgagaccatattttagattgtttattaactggcttcct
gaccttggctgtctagaacctattgttgatggtgccaactttcagatattgacagctttt
gctaatgcatttcatgcgttgcaccctcttaagattccagcgttcagctatgcttggctt
gagctggttagtcatagaagttttatgccaaagatgcttactgggaataatcagaagggt
tggccttacatccagcgtttgctggtagacgtgttccaattcatggagccatttttgcgg
aacgctgaacttggaccaccggtttattttctttataaaggcacccttagggtgttgctt
gtcttacttcatgatttccctgagttcctatgtgactatcattttactttctgcgatgtg
attcctcctagctgcattcagatgcggaatattatccttagtgcgtttcctcgtaacatg
agactaccagatccgtccacccccaatttgaagattgacttgcttgcggaaatcaatcaa
tccccacgtattctatctgaggtggatggagctcttaaatcaaagcagatgaaggccgac
gtggatgagtatctcaagacaaggcaacagggatcatcgtttctggctgatctgaagcag
aagttgctacttccacccattgaagctgcttctgctgggacgcgttacaatgtgcctttg
atcaactccctcgtactttacgttgggatgcaggccatccaacaacttcaggcaagaagt
cctcatgctcagtcaacggctaatactgttacattagcagtatttctggtgggtgctgct
ctagatattttccagactctgatcgtggagttggatactgaagggcgctacctcttcctc
aatgccgtcgcaaaccaacttcgttatccgaatacccacacccattacttttcttttgtg
ctcctatacctgttcgctgaatcgactcaggaaattatccaggagcagataacaagagtg
ttgttggaacgcctcattgtcaatagacctcatccatggggactgctgattacattcatt
gaacttattaagaatccaagatacaacttttggaaccggtcctttataagatgtgcacca
gatatcgaaagactatttgagtcggtctctagatcctgcggtggccctaaatctgcagac
gagaacatggttcaaaattgggtacctgataccgcccactag
DBGET
integrated database retrieval system
