Cucurbita moschata (crookneck pumpkin): 111432359
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Entry
111432359 CDS
T05248
Name
(RefSeq) uncharacterized protein LOC111432359
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111432359
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmos03019
]
111432359
03400 DNA repair and recombination proteins [BR:
cmos03400
]
111432359
Enzymes [BR:
cmos01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
111432359
Messenger RNA biogenesis [BR:
cmos03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
111432359
DNA repair and recombination proteins [BR:
cmos03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
111432359
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
RQC
HTH_40
RecQ_Zn_bind
HRDC
ResIII
Helicase_C
GAD
Motif
Other DBs
NCBI-GeneID:
111432359
NCBI-ProteinID:
XP_022924974
UniProt:
A0A6J1EAR9
LinkDB
All DBs
Position
Unknown
AA seq
880 aa
AA seq
DB search
MEAILKSSFGFSAFRPYQKEVIQDILQGKDCLVVMATGSGKSLCYQVPPLVVGKTGIVVS
PLISLMQDQVMALKQRGIMSEYLGSTQTDSTVQAKAENGQYNILFMTPEKACSVPISFWS
KLQKAGICLFAVDEAHCISEWGHDFRVEYKRLDKLRDVLPGLPFVALTATATAKVRSDII
SSLKMKDPQVTIGSFDRTNLFYGVKSFNRGPLFLNELVLDISKYLASGGSTIIYCTTIKD
VEQIFKALEEAGICAGIYHGQMDKKARAESHRLYHYFEALMEILSFMSCCGLLCMCFSAF
MEMCPKSLESYYQESGRCGRDGMASVCWLYYTRSDFSKADFYCGESQTENQRRAIMESLM
AAQQYCSLATCRRSFLLNYFGEKYQFDKCGNCDNCIVSKKERDMSKEAFLLLATIQSCRG
KWGLNMPVDILRGSRAKKILDAQFDKLPLHGLGREYSSNWWKALASQLISQGYLTENIRD
VYRTISISAKGEKFLNAARDDCQLPLVLPVTSEMIGESGDDNTLIETGRMENLTTLKSGL
SEAEAKLFQMLLDERMKLARSAGTAPYAICGDLTVKKIALTRPSTKARLANIDGVNQHLL
KMHGDLILQAVKHLSQEVGLSLDGECKEDGNGQCTSARKLNTESNQGRPLAPAKFEAWKM
WYEDGLSIPKIANFPGRSAPIKETTVSGYILDAAQEGYAIDWTKFCDEIGLTCSLFSDIQ
SAVSKVGSTDKLKAIKDELPEEINYAHIKACLFMQKCGISPETTLPRDEKTDEPMNVVPK
FSGSPTSKQQKEEPNVATACNPSTEEIPISLKRQKVEENRVPVKATESSLVEWLKNNDGV
TLDNMMQHFKGSEEESLVAMLNALEGDFVIYRKNNIYKLM
NT seq
2643 nt
NT seq
+upstream
nt +downstream
nt
atggaggctattctaaagagttcatttggtttctcggcgttcaggccgtatcagaaagaa
gtcattcaggacattcttcaagggaaggattgcttggtggtcatggctactggaagtggc
aagtccttatgttatcaggtaccgcctttggttgttggaaagactggcatagttgttagc
cctcttatatcactaatgcaagatcaggtaatggctttaaaacaaagaggcatcatgtct
gagtaccttggcagtactcagactgattccactgttcaagccaaggcggagaatggtcaa
tataatattttgttcatgacaccagagaaggcatgctctgttcctatcagcttttggtca
aaattacagaaggcaggaatttgtttgtttgccgttgatgaagcacactgcatttcagag
tgggggcatgatttcagggtagaatacaaacgattggacaaactacgagacgttctacca
ggccttccatttgttgccttgactgccactgctactgcaaaggttcggagtgacatcatt
agttctttgaagatgaaagatccacaagttaccattggttcatttgatcggactaacctt
ttttatggagtgaagtcttttaatcgtggtccattattcttgaacgagctcgtgctcgat
atatctaaatatctggcctctggtggttcaactatcatttactgcacgacaattaaagat
gttgagcagatattcaaggcacttgaagaagcagggatttgtgctggtatctatcacggt
caaatggacaaaaaagcacgtgccgaatcccacaggttataccactattttgaggctctt
atggagatcttgtcatttatgagctgttgtggcctgttatgtatgtgtttctctgctttt
atggagatgtgcccaaagagtctagaatcttattaccaggaaagtgggcgatgtggtaga
gacggtatggcttctgtttgctggctttattacacgagaagcgactttagtaaagcagac
ttttactgtggggaatcacaaactgaaaaccaaagaagagctattatggagtcgttgatg
gctgcacaacagtattgttcactagcaacttgcagaagaagcttcttgctcaattatttt
ggggaaaaatatcagtttgataaatgtggaaattgtgataactgcatagtctccaaaaag
gagcgtgacatgtcaaaggaagcatttcttctgctggcgaccatccaatcatgcaggggt
aaatggggactgaacatgcctgtggatattcttcgtgggtctcgagctaaaaagatactt
gatgctcagtttgacaagcttccacttcatggacttggaagagaatactcatcaaattgg
tggaaagcattagctagtcaactaatttctcaaggctatttgacagagaacatacgtgat
gtttacagaaccataagtatcagtgcaaaaggggaaaagtttctcaatgctgccagagat
gactgtcaactgcctctagttttgccggtgacaagtgaaatgattggtgagagtggagat
gacaatacattaattgaaactgggagaatggagaatttgactactttgaagagtggactt
tcagaggctgaggcgaaactctttcaaatgcttttagacgagagaatgaagcttgctcga
agcgcgggaactgccccgtatgccatatgtggtgatctaacagttaaaaaaattgcatta
actagaccatctaccaaggcaagattagcaaatattgatggtgtcaaccagcacctgcta
aaaatgcatggagatctaatccttcaagcagtgaagcatctatcacaagaagttggtctt
tcactggatggtgaatgtaaagaagacggaaacggacaatgtacgtcagctcgaaaactt
aatacagaatccaatcaagggagaccgttggcaccggcgaagttcgaagcatggaaaatg
tggtatgaagacggtctctcaatcccgaaaatcgctaacttccctggtagatcagcacct
atcaaagaaactactgtttctgggtacattcttgatgcagctcaggaaggatatgcaatt
gattggaccaaattttgtgatgagattggtcttacatgttcgttattttccgatattcaa
tctgctgtttcgaaggtcggatctacggacaagttaaaagctataaaagatgaattaccc
gaggagattaattatgcacacatcaaggcttgtctgttcatgcaaaaatgtggaatatcc
cccgaaactacgctaccccgagacgaaaaaaccgacgaacctatgaatgttgtgccaaag
ttttcagggagtccaacctcaaagcagcaaaaagaagagcctaatgtagccacagcttgt
aatccttcaacagaggaaattcccatctcattaaagcgtcaaaaagtcgaagaaaatcgg
gttccagtaaaagcaaccgagagctcgctagtagagtggctgaagaacaatgacggggtt
acacttgacaatatgatgcagcacttcaaaggctctgaagaagaatctctggttgctatg
ctaaatgctcttgaaggcgattttgtgatatatagaaagaacaatatctacaagctcatg
taa
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