Cucurbita moschata (crookneck pumpkin): 111433090
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Entry
111433090 CDS
T05248
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03020
RNA polymerase
cmos03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
111433090
09124 Replication and repair
03420 Nucleotide excision repair
111433090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmos03021
]
111433090
03400 DNA repair and recombination proteins [BR:
cmos03400
]
111433090
Enzymes [BR:
cmos01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
111433090
Transcription machinery [BR:
cmos03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
111433090
DNA repair and recombination proteins [BR:
cmos03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
111433090
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
MRNIP
Motif
Other DBs
NCBI-GeneID:
111433090
NCBI-ProteinID:
XP_022925785
UniProt:
A0A6J1EJ66
LinkDB
All DBs
Position
Unknown
AA seq
1200 aa
AA seq
DB search
MDEYEEYDRNMNDDDDDIDQTMHDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQ
NTMQEIVDESADIEIRPESQHNPGHQSDVAETIYKISFGQIYLSKPMMTESDGETATLFP
KAARLRNLTYSAPLYVDVSKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQN
SEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMA
ESQNRPPSTMFVRMLSQTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEH
ICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTKEKRIKYAKEILQKEM
LPHVGVGEFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRML
FRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQ
VLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLAL
MVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLR
RLRRRVDVNTEVGVVRDVRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRESP
EDGGWHDLVAKGFIEYIDTEEEETTMISMTISDLIQARVNPVEAYSDTYTHCEIHPSLIL
GVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAM
EHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTL
VKEDFGRPDRTNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQEEAQGQAAR
YSRRDHSISLRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVG
MTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT
VDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPV
QILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCECCGLIAI
ANLKKSSFECRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRMFTKEVKPLKDQKKKGS
NT seq
3603 nt
NT seq
+upstream
nt +downstream
nt
atggacgagtacgaagagtatgatcggaatatgaatgacgacgacgacgatattgaccag
actatgcatgacgatgaagaagagatcacgcaggaagatgcttgggcagtaatttcagcc
tattttgaagagaaggggttggtccggcagcagctcgattccttcgatgagtttattcag
aatactatgcaagaaatcgtggacgagtctgccgacattgagattcgtcccgagtcgcag
cacaatcccgggcaccagtctgatgttgctgagacaatatacaagatcagctttggtcag
atatacttgagtaagcctatgatgaccgaatctgatggagagactgcaacattatttcct
aaggctgcacgattgaggaatctaacgtactcggcgcctttatatgtggatgtctcaaaa
agagtcataaagaaaggtcatgatggtgaagaagtaactgaaacccaagattttacaaaa
gtttttattgggaaggttcccatcatgctccggtcgagttattgcacgttgtatcagaat
tctgagaaggatctgactgagctcggggagtgtccatatgaccaaggaggatattttatc
atcaatgggagtgagaaagttcttattgcacaagagaagatgagcacaaatcatgtgtat
gttttcaaaaaaagacagcctaacaagtatgcctttgtggcagaagtccggtctatggct
gagtcgcaaaatagaccacctagtaccatgttcgtacggatgctttctcaaactagtgcc
aaggggggctcttcaggacaatacatacgtgccactctgccttacattcgaactgagatt
cctattattattgtgtttcgtgctctaggatttgttgctgacaaagatattctagagcat
atatgttatgacttctctgatactcaaatgatggagttgcttcggccttccctggaagag
gcttttgttatccaaaatcagcaggttgcacttgactacatcgggaagagaggatcaaca
gttggtgtgactaaggaaaagaggattaagtatgccaaagagatccttcaaaaagaaatg
cttcctcatgtgggcgtaggtgaattttgtgagactaagaaggcatactattttgggtat
ataattcaccggctactcttatgtgctcttggccggagagcagaagatgatagggatcat
tatgggaacaaaagactggaccttgctggtcctttacttggaggcttgtttagaatgctc
tttagaaagttaacaagagatgtgagaggttacgtacaaaagtgtgttgataatggaaag
gatgttaatttgcaatttgccatcaaagcaaaaactattactagtggcctgaaatattcg
ctagccactggaaactgggggcaggcaaatgcagctggtacaagagctggagtatcacag
gtgttaaatcgtttgacatatgcttctaccttgtctcacttacgaaggctgaattcaccc
attggacgagaaggtaaactggccaagcctcggcagttgcataattcacaatggggaatg
atgtgtcctgctgaaacacctgaaggacaagcttgtggactggtaaagaatcttgcattg
atggtttatataacagttggatctgcggcatatcctattttggaatttttggaagaatgg
ggcacagaaaattttgaggaaatttctcctgctgtcattcctcaagcgacaaaaattttt
gtcaatggttgttgggttgggatccatcgggatcctgaaatgttggtgaagactttaagg
cggctgagacgacgagttgatgtaaatactgaagttggagtagttagagatgtccgcttg
aaagaacttcggatatatactgattatggccgttgcagtcgtccattattcattgttgag
aaacaaaggcttctcataaagaagaaggatatccatgcccttcagcaaagagaatcccct
gaagacggtggttggcatgatcttgtagcaaagggattcattgaatacatagacacggag
gaagaggaaaccaccatgatttccatgacaattagtgatcttatacaagcaagggtcaac
ccggttgaggcttattctgacacctatactcattgtgaaatccatccatcattgattttg
ggcgtttgtgcttcaattattccatttcccgaccataaccagtccccacgtaacacgtat
caatctgctatgggtaagcaagctatgggaatctatgtcaccaactaccaattccgaatg
gatactttggcctatgttttgtattatccacaaaagcctcttgttactacacgagctatg
gagcatctccatttcaggcagcttccagctggcattaatgccattgttgccatcgcttgc
tactctggttataaccaggaagattctgtgatcatgaatcaatcctctattgaccgtgga
ttttttaggtcacttttcttccggtcttacagggatgaggagaaaaagatgggaactctt
gtaaaagaagattttggacggcctgacaggactaatactatgggtatgaggcatggctcc
tatgataaattagatgacgatggtcttgcaccacctggtactcgagtatcaggtgaggac
gttattattggaaagactactcctatttctcaggaagaagctcagggacaagctgcacgt
tactcaagacgtgatcatagcattagtttacgtcatagtgaaaatgggattgtagatcaa
gttctactgactacaaatgctgatggattgaggttcgtaaaagtaagggtgagatctgtt
cgaataccccagattggggataagttcagtagtcgacatggacaaaaagggacagtggga
atgacttacacacaagaagacatgccttggactgtggaaggaatcacccccgatattatc
gtgaatccacatgctattccttctcgtatgacaattggtcagcttattgagtgtatcatg
gggaaggtggcagcccacatgggaaaagaaggagatgctaccccatttactgatgtcact
gtggataacatcagtaaggctctgcataagtgtggttatcagatgcgtggatttgaaacc
atgtataatggccatacaggccggcggctctcagcaatgatattccttggtccgacctac
taccaaaggctgaagcatatggttgatgacaaaatacattcacgtggaaggggtcctgtg
cagatccttacgagacaacctgctgagggtcggtcacgtgatggtggtcttcgatttggg
gagatggagcgtgactgcatgattgcccatggtgctgctcattttctcaaggagaggttg
ttcgatcaaagtgatgcatataggatccatgtctgtgagtgctgcggattgatagccatt
gcaaatctcaagaagagttccttcgaatgtaggggatgtaaaaacaaaacggacatcgtt
caggtttatatcccttatgcctgtaagcttctcttccaagagcttatggctatggcaata
gcgccacggatgttcacaaaggaggttaaaccattgaaagaccaaaagaagaaaggatcc
tga
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integrated database retrieval system
