Cucurbita moschata (crookneck pumpkin): 111433104
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Entry
111433104 CDS
T05248
Name
(RefSeq) RNA polymerase II transcription factor B subunit 2
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03022
Basal transcription factors
cmos03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
111433104
09124 Replication and repair
03420 Nucleotide excision repair
111433104
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmos03021
]
111433104
03400 DNA repair and recombination proteins [BR:
cmos03400
]
111433104
Transcription machinery [BR:
cmos03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
111433104
DNA repair and recombination proteins [BR:
cmos03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
111433104
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
111433104
NCBI-ProteinID:
XP_022925808
UniProt:
A0A6J1EGA7
LinkDB
All DBs
Position
Unknown
AA seq
451 aa
AA seq
DB search
MPQVKIIAKNFMDMVASLPAMKLDQLYGNAFICEAILRSLPPLAKKFVLQMLYIDAPVTA
KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYKLNPTFQANLQKLLIQGEVL
AREPMPSNITVRLPNLEELEAYALDQWECFLLQLINSGQADKPSNISSSVMKVFQKGLLS
QRDKETPRLTESGFQFLLMETNAQLWYIIREYISNAEERDVDPADLISFLLELSFHVTGE
AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDSWFIPTKLATNLSMSLADSSSRKQGFVV
VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAQQIVTFL
QQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREW
NGLLWEDSKTLRLVVKADIHTHMREHLRRQK
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atgcctcaagtaaagatcatagcgaagaattttatggacatggtggcctccttgcccgcc
atgaagctcgatcaactctatgggaatgccttcatctgcgaagccattctcaggtcactt
ccacccctggccaagaagtttgttttacaaatgttatacattgatgctccagtaacagcc
aagtccatggaggagtgggtgctcccagatggagtctcgaagtataaggttgccgttgat
cgattgattcaattgagagtatttattgagactgcggataggaaaagagaaacaacctac
aagctaaatccaacgttccaagctaacctccaaaagcttttaattcagggtgaagttcta
gccagagaaccaatgccttctaatattaccgtgaggcttccaaatttggaagaacttgag
gcttatgctctggatcagtgggagtgcttcttgctgcaattgataaactcaggccaagcg
gataagccctcaaatattagttcttctgtgatgaaagttttccagaaaggccttttaagt
cagagggataaagaaactccacgattaactgagagcggtttccagttcttgttgatggaa
acaaatgcacaactttggtatatcatcagagaatatatatctaatgccgaggagcgagat
gttgatcctgcagatttgatttcttttctgctggagcttagttttcacgtgacaggagag
gcttatgatattgatacactgacagaagaacagaggtatgctatcaaggaccttgctgat
ctgggactagttaagcttcagcagggtagaaaagacagttggttcatacctactaaatta
gccacgaatctttcaatgagtttggcagattcttcttcgaggaaacagggatttgttgtc
gtggagacaaatttcaggatgtatgcttattcttcttccaaactacattgtgaaatatta
cgtcttttttcgaggattgagtatcaacttccaaatcttatagttggagcaataacgaaa
gaaagcttgtataatgcttttaagaatgggattacggcacagcagatagttacttttcta
cagcagaatgcacatcctcgtgttgcagagagaataccatcagtcccagaaaatgtcacg
gatcagattaggctttgggaatcggatcttaatagagttgatataactcccgcacatttt
tacgacgaattcccttccagggaagttttcgaggctgcttgcgactatgcacgagaatgg
aatgggttgctatgggaggactcgaaaaccttgcgactggtagtgaaggcagacatacac
acacatatgcgggaacatcttcgccgtcaaaagtag
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