Cucurbita moschata (crookneck pumpkin): 111434076
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Entry
111434076 CDS
T05248
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30-like
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111434076
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmos03021
]
111434076
03019 Messenger RNA biogenesis [BR:
cmos03019
]
111434076
Transcription machinery [BR:
cmos03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
111434076
Messenger RNA biogenesis [BR:
cmos03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
111434076
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH_2
Torus
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
111434076
NCBI-ProteinID:
XP_022927141
UniProt:
A0A6J1EGV5
LinkDB
All DBs
Position
Unknown
AA seq
706 aa
AA seq
DB search
MEDSEGVLSFDFEGGLDAGPTNPAATSSLPIIQSDSSSFPAASANSVAGAVGPAATADAP
GAPTGNVGNRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQDC
VYKHTNEDIKECNMYKFGFCPNGSDCRYRHAKLPGPPPPVEEILQKIQQLGSYNYGSSNK
FFSQRGVGLSQQNEKSQIPQGLAPVTQGVLGNPSAAESADVQQPQAQQTAQQTSQTQTQG
LSNGQPNQLNTTATSLPPGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSA
DNVILIFSVNRTRHFQGCAKMMTRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCELSFQ
KTRHLRNPYNENLPVKISRDCQELELSIGEQLASLLYLEPDGELMAVSVAAELKREEEKA
RGVNPGSGSENPDIVPFEDNEEEEEEDSEEEEEEESLGQSVGLPAQGRGRGRGIMWPPHM
PMGRGPRPFHGMPGFPPGMMGPDGLPYGPVTPDGFPMPDMFGMAPRGFGPYGPRFPGDFM
NPPAAMMFRGRPSQPGVMFPPGGFGMMMGQGRGPFMGGMGVPGPNPARPGRPMGVSPLYP
PPALPSSQNINRAAKRDQRGGPGSDRNDRYITGPDQNKGQEMPRHDEEMQYKQSKTYPDE
QYGLGTTSRNEESESEDEAPRRSRHGEGKKKRRGSEGGDATAISDQ
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atggaggattccgagggcgttctcagcttcgatttcgagggcggcctcgatgccggcccc
actaaccccgccgccacctcctccttgcccataatccagtcagattcttcttccttcccc
gccgcttccgccaactccgttgccggcgccgtcggtcctgctgctacagctgatgctcct
ggcgctccaaccggcaacgtcgggaatcggaggagcttccggcaaacggtttgccggcat
tggcttcgaagcctctgtatgaagggcgacgcctgtggcttccttcaccagtatgataag
tctcggatgcccatttgccgattcttccgtctctatggcgagtgccgtgagcaggattgc
gtgtacaaacataccaatgaagatattaaggagtgtaatatgtacaagtttggtttctgt
ccaaatggttctgattgtcgatataggcacgcaaagctgcctggacctccacctccagtg
gaagaaatccttcagaaaatacagcaattaggttcatacaattatggttcctcaaacaaa
ttcttttcacaacgtggagttggcttatcccaacagaatgaaaaatctcagattcctcag
ggtctggcccctgttactcaaggagttttaggaaacccttctgcagcagaatctgctgat
gtccaacagccgcaagctcaacaaactgcacaacaaaccagccagactcagacacaaggt
ctttctaatggccagcccaatcaactaaacacaactgcaacgtctttgcctccaggaata
tctaggtactttattgttaaaagttgcaaccgcgagaatttggaattatctgtacaacaa
ggggtatgggcaactcaaagaagcaatgaagccaaacttaatgaagcttttgattctgct
gataacgttattttgattttctcagtcaatcggactcggcattttcagggttgtgcaaag
atgatgaccagaattggtggatctgtcagtggaggcaattggaaatatgcacatggaact
gcacattatgggcaaaacttttcactcaaatggctgaagttatgtgaactatccttccag
aaaactcgtcatttgaggaatccatataatgaaaacttaccagtaaagatcagtagagat
tgccaagagctagagctctctattggtgagcagctggcttctttgctttatcttgagcca
gatggtgaactcatggccgtctcagtagcagcagaattgaaacgagaagaggagaaagca
aggggagttaatcctggcagtggaagtgagaacccagatattgtcccgttcgaggataac
gaagaagaggaagaggaagacagtgaagaggaggaggaggaggagagtcttggccagtcc
gttggtttaccagctcagggcagaggaaggggcaggggaatcatgtggcctccacatatg
ccaatgggacgtggtcctagaccctttcatggaatgccgggttttccacctgggatgatg
ggtccggatgggctgccttatggtcctgttacacctgacggatttcccatgcctgacatg
tttggaatggctcctcgtggctttggtccatacggtcctaggtttcccggtgattttatg
aatcccccagctgctatgatgttccgtggacgaccttctcaacctggggtcatgttccct
cctggtggatttgggatgatgatgggtcaaggacgtggtccctttatgggtgggatgggg
gttcctggtcctaacccagctcgacctggtcgtcctatgggcgtgtctccgttgtatcca
cctcctgcattaccgtcatctcaaaacatcaatcgagctgctaagagggaccaaagggga
ggaccgggtagtgatcggaatgatagatatattacaggtccagaccaaaacaagggccag
gagatgcctagacatgatgaagaaatgcaatataagcagtcaaaaacttatcctgatgag
caatatgggctaggaaccacctctaggaatgaagaaagtgaaagtgaggacgaggcacct
cgacgatcgaggcatggagaagggaagaagaagcggagaggctcggaaggaggagatgca
acagcaatctctgatcagtaa
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