Cucurbita moschata (crookneck pumpkin): 111435142
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Entry
111435142 CDS
T05248
Name
(RefSeq) zinc finger CCCH domain-containing protein 41-like
KO
K13192
RNA-binding protein 26
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cmos01009
]
111435142
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmos03019
]
111435142
03041 Spliceosome [BR:
cmos03041
]
111435142
Protein phosphatases and associated proteins [BR:
cmos01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
111435142
Messenger RNA biogenesis [BR:
cmos03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
111435142
Spliceosome [BR:
cmos03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
111435142
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
Nup35_RRM_2
RRM_Nup35
zf_CCCH_4
PHM7_cyt
RRM_PARP14_3
zf-CCCH
Motif
Other DBs
NCBI-GeneID:
111435142
NCBI-ProteinID:
XP_022928251
UniProt:
A0A6J1EJT5
LinkDB
All DBs
Position
Unknown
AA seq
891 aa
AA seq
DB search
MELKISYPKPDISSSEYVSDPEEKDISDDEDDDRNHKHRRRETHSQSLETDTREHDLRPY
GKRSKPFENGRSFRDNDSQANEAWKSFNSSTLEKDIPGKFDKRRLGGVPGSRVAGDFNQR
IRANQAFSSDLSFGRGRGRESAPWNQFDSRFSPVDIASQIVHHGPFPPRLFAGRGLPSVS
TSQTAPWNTFGLIPGIPNGGLEPMHSIGFQGTLRPPINPSLNIGMPRQRCRDFEERGFCL
RGDMCPMEHGTNRIVVEDVQSLSQFNLPLSLPNAQLMGKSTGSLPTVSTSSTTVMCGKGL
LGKNTKPGVGDDSLAFHGVYSGSGNAAEADLYDPDQPLWNNNCPEKQNALSGMHSSKIDE
VETLVGDDPSDRNQVRKCDAADNGCTSRITVTSGQQVTSLFAGGRGGSRNRHDMKGKLDP
VVSSSGYHENEVKEHNEVLTSVQGNSHQEKHMAQDDARTKAGDSSLKAHSDAMRTLRKPS
QKAMRTLFVNGIPQQSNNTEALLSHFKKYGEVIDIYIPANSQRAFVQFSKREEAEAALKS
PDAVMGNRFIKLWWANRDSIPDDGVSSNNGIHVLPHHIAAASLPSIAVKGKNCVQVSTSK
GGISHPLESSLAAPDHSHAFNSPKKPPLQKKLENLEQLKEQLRKKQEMLDMKRNDFRRQL
DKLEKQTSGSKADAITGFSAKRLKVGVEADTSKLVSPKASESSIPLASPHTEVNGENVEH
STCTVQQESSKFEPDHPLAPEAPFDIGFRILPPLPAEFANENVINEHFSAFGDVRTVELV
SENSSSISNASSIYSANVTFLTRHSAEMAFENGKCRQGQDLKFVWLSNGKDPDDKSSEAS
RDVDMDPKNESEISLFIETSRDGEFKNSTRDSCVEPSETGKVSPVIERDMN
NT seq
2676 nt
NT seq
+upstream
nt +downstream
nt
atggaactgaaaatttcatatcctaagccagacatttcttcctctgagtatgttagtgat
ccggaggaaaaggatattagtgatgatgaagatgatgatcgcaaccataagcataggagg
cgggagacacactctcagtctttggaaacagatacacgtgaacatgatttgaggccatat
ggaaagcgcagtaaaccttttgaaaatggacgtagttttagggacaacgattctcaagcg
aatgaagcttggaaatccttcaattcttccactcttgagaaagacatccctgggaagttt
gataaaagacgcctaggtggagtgccaggttctcgagtggctggggatttcaatcaaagg
atcagggcaaaccaggcgttttctagtgacctaagttttggtaggggaagaggcagggaa
tctgccccttggaaccagtttgattcaaggtttagtcctgttgatattgcttcccaaatt
gttcaccatgggccttttcctccgaggctatttgctggaaggggtttaccaagtgtttct
acttcacaaactgcaccatggaatacatttggattaataccaggaattccgaatggtggg
ctagaaccgatgcactctattggttttcagggaacacttaggcctccgatcaacccttct
ctgaacattggcatgcctcgtcagagatgtagagattttgaggaacgtggattctgtctt
agaggagacatgtgtccaatggagcatggaactaatcgcattgtagttgaggatgtccag
agtctttctcaatttaatcttcctctgtcgcttccaaatgcacaattaatggggaaatct
actggatctctgccaacagttagcacatcttccacgacagtaatgtgtggcaaagggtta
cttggaaaaaataccaagcctggtgtaggagatgattcattggccttccatggtgtatat
tcaggttctggtaatgcagctgaagctgacttgtacgatcctgatcaacctctatggaac
aataactgtcctgagaaacaaaatgcactctcgggtatgcattcatcaaagattgatgaa
gttgaaaccttggtaggagatgatccttctgataggaatcaggttaggaaatgtgatgct
gctgataatggatgcactagtagaattactgtaactagtggtcaacaggttactagtttg
tttgccgggggtagaggtgggtctagaaatagacatgatatgaaaggtaaacttgatcca
gttgtaagttcctctggctatcacgagaatgaagtgaaggaacacaatgaagttttgact
agtgtccaaggaaattcccatcaagaaaagcacatggctcaggatgatgctcgaacgaaa
gctggagattcatctctcaaggcacatagtgatgccatgcgtactttgcggaaaccttct
cagaaagcaatgcgtactttgtttgtcaatgggattccacaacagagtaacaatacagag
gcacttctttctcattttaaaaaatatggcgaggtcattgacatctatattccagcaaat
agccaacgagcttttgtccagttctcaaaaagggaagaggcagaagctgctctaaagtca
cctgatgctgttatgggcaatcgttttatcaaactttggtgggctaatcgtgacagcatt
cctgacgatggtgtaagcagtaataatggtattcatgtacttccacatcatattgcagct
gcttcacttccttctattgctgtcaaaggaaagaactgtgtccaggtttctacttcaaaa
ggcggcatttcccatccattggaatcttctttagctgccccagatcactctcatgctttc
aatagcccgaagaaacctcctttgcaaaagaaattagagaatctggaacagttaaaggag
caactccggaagaagcaagaaatgctagacatgaagcggaatgatttcagacgccagtta
gataaacttgaaaaacagacctcaggaagcaaagccgatgcaatcactgggttttctgca
aagcggcttaaagtgggagtagaagctgacactagtaagcttgtttctccaaaagccagc
gaatcaagtattcctttggcgtcaccacatactgaggttaatggggagaatgttgagcac
tccacatgtactgtacaacaggaatcctcaaagtttgagcctgatcatccattggcaccc
gaagcaccttttgacattggatttagaattcttcctcctttaccagccgaatttgccaat
gagaatgtgataaatgagcatttctcagccttcggtgacgttcgtactgtcgaacttgtt
tcggaaaatagcagcagcatttcaaatgcatccagtatctactcggctaatgtcaccttt
ttaacccgtcattcagctgaaatggcatttgaaaatggcaaatgtaggcaaggtcaagac
ttgaaatttgtatggctatctaatggcaaagaccctgatgacaagtcttcagaggcatct
cgagatgtcgacatggaccctaaaaatgaatcagaaatcagcctctttatagaaacctca
agagacggagaattcaagaattcaacacgagacagttgtgtcgagccttcggaaacaggt
aaagtttcccccgtgattgaaagagacatgaattga
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