Cucurbita moschata (crookneck pumpkin): 111435248
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Entry
111435248 CDS
T05248
Name
(RefSeq) DNA-directed RNA polymerase II subunit 1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03020
RNA polymerase
cmos03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
111435248
09124 Replication and repair
03420 Nucleotide excision repair
111435248
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmos03021
]
111435248
03400 DNA repair and recombination proteins [BR:
cmos03400
]
111435248
Enzymes [BR:
cmos01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
111435248
Transcription machinery [BR:
cmos03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
111435248
DNA repair and recombination proteins [BR:
cmos03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
111435248
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
TACC_C
Motif
Other DBs
NCBI-GeneID:
111435248
NCBI-ProteinID:
XP_022928584
UniProt:
A0A6J1ELE9
LinkDB
All DBs
Position
Unknown
AA seq
1854 aa
AA seq
DB search
MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI
DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK
FKQAMRIKNPKNRLKKILDACKNKTKCEGGDEIDVQGQDSDQPVKRGRGGCGAQQPKISI
DGMKMVAEYKAQRKKNDDQEQLPEPVERKQTLSAERVLGVLKRISDDDCKLLGLNPKYAR
PDSMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS
EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
LLGCRKITKRDTFITKDVFMNILMWWEDFDGKVPAPAILKPQPLWTGKQVFNLIIPKQIN
LSRTSAWHSESESGFITPGDTFVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA
RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL
EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQK
LDSLKMKKKEFERIFRYEFEDENWKPSYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ
LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP
GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK
PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDMDFVKSYYEMPDEEI
APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP
EMEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH
LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLEFGMTPSRSPISGTP
YHEGMMSPSYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT
SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY
SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYN
PQSAKYSPSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYN
TGASPDYSPSSPQYSPSAGYSPTAPGYSPSSTSQYTSQTTDKDDRSRKDDRSNR
NT seq
5565 nt
NT seq
+upstream
nt +downstream
nt
atggatttgcggttcccctactccccggctgaggttgccaaagtccgaatggttcagttt
ggcatacttagcccagatgagattaggcaaatgtccgtggtgcaaattgagcatggtgaa
actacagagaggggtaagccaaaagtaggtggtttgagtgacccgcggcttggtacaatt
gacagaaaaatgaagtgtgaaacttgcactgcgaacatggctgaatgccctggacacttt
gggcacctcgagcttgccaagccaatgtttcatattggatttatgaagactgtgctcact
atcatgcgttctgtttgcttcaattgctcaaagattctagttgacgaggaggacccaaaa
tttaaacaagcgatgcggataaagaatcccaagaacaggcttaaaaagattttggatgcc
tgcaagaacaaaaccaagtgtgaaggtggagatgaaattgatgtccaaggccaagattca
gatcaaccggtgaaaaggggtcggggtggctgtggtgctcagcagcctaagatctcaatt
gatggtatgaaaatggttgcagagtacaaggctcagaggaagaaaaatgatgaccaggag
cagctgcctgaacctgtggaaagaaaacagacacttagtgccgaaagggttcttggtgtt
ctgaaaagaataagcgacgatgattgcaaactcttgggcctaaatccaaagtatgctcga
cctgactcgatgattctgcaagtccttccaattcctccacctcctgtgagaccatcggtt
atgatggacacctcatctagaagtgaggacgatctaactcatcagttggctatgattata
aggcacaacgaaaacctcaggaggcaagaaagaaatggttctcctgcacatatcatttca
gagtttgcacaactactgcagtttcatatagccacgtattttgataatgaattacctgga
ctacccagggccacacaacgatctgggaggcccattaaatctatttgtagtaggctcaag
gcaaaggaaggccggattaggggtaatttgatgggaaaacgtgtagatttttcagcacgt
acagttataacacctgatccaacaattaatattgatgaactgggagtgccatggagcatt
gctttgaaccttacatatccagaaaccgtgacaccatataatatagagagattaaaggaa
cttgttgaatatggtccccatcctccacctggtaaaactggtgccaagtacattatacga
gatgacgggcagaggcttgatcttcgatatcttaagaaaagtagcgatcatcatttggag
cttgggtacaaggtggagcgtcatttgaacgatggtgactttgtactttttaatcgtcag
cctagtctccataaaatgtctatcatgggacacagaatcaagattatgccctactcaact
ttccgcctaaatttatctgtcacgtcaccttacaatgctgattttgatggtgatgaaatg
aatatgcatgttcctcagtcatttgagacaagggcagaagtattggagctcatgatggtt
cccaaatgcattgtgtcacctcagtcaaaccgtcctgtcatgggtatagtgcaagatact
ctgttaggatgccgtaaaattacaaaaagggacacctttataacaaaggatgttttcatg
aatatcttgatgtggtgggaagattttgacgggaaagttcctgcccctgcaattttaaag
ccacaacctctttggactggaaaacaagtttttaatcttatcataccaaagcagattaat
ctctcgagaacttctgcttggcattcggagtctgaatctggattcattactccgggggat
acttttgttaggattgagaagggggaactgctttctggaactctttgcaagaagactctc
ggaacttcaactggaagtcttatacatgttatttgggaggaggttggtcctgatgcagct
agaaaatttcttggtcatacacagtggcttgtcaattactggcttttgcagaatgctttt
agcattgggattggagatacaattgctgatgcagccaccatggagaaaattaatgaaact
atttctgcagctaaaaatgaagtgaaaaatctcattaagaaagcccaggagcgtagttta
gagcctgaacctggacggacgatgatggattcatttgaaaacaaagtgaaccaggtcctg
aataaggctcgtgatgatgctggtagtagcgcgcaaaaaagtttgtcagagagtaacaat
ctgaaagctatggttactgcaggatccaagggaagttttatcaatatctcccagatgact
gcttgtgtggggcagcaaaatgttgaagggaagcgaataccatttggttttattgatcga
actttgccccatttcactaaagatgattatgggcctgaaagtcgtggctttgttgaaaac
tcatatcttcgaggattgaccccacaggagttcttttttcatgctatgggaggtagggaa
ggtcttattgatactgcagtcaagacctctgaaacaggatacattcagaggaggctggtg
aaggccatggaggatatcatggttaaatatgatgggactgttcgaaactcactgggtgac
gtaattcagtttctttatggtgaagatggcatggattctgtttggatagaatctcagaaa
ctcgattctttgaaaatgaagaaaaaggaatttgagaggatcttcaggtatgagtttgaa
gatgagaactggaagccaagctacatgttgccagagcacgttgaagatttaaaaactatc
cgtgaattccgcaatgtattcgaggctgaagtccaaaagcttgaagcagacaggtatcaa
ttgggaacagaaattgcaaccacaggtgaaaactcgtggccaatgccagttaacctcaaa
aggcttattcagaatgcacaaaagactttcaaaattgactttcgaagggcctctgatatg
catcctatggaaattgttgaagctatcgacaaacttcaagaacggctgaaggttgttcct
ggtgaagatcctcttagtgtggaggctcaaaagaacgccacccttttcttcaatatattg
ctgcgaagcacttttgctagcaaaagggttttggatgaatacaggcttacacgcgaagcg
ttcgagtgggttattggagaaatagaatcacgcttccttcagtcactagttgcacctggt
gaaatgattggctgtgttgctgcacaatccattggagagccagcgactcagatgacgctt
aataccttccattatgctggtgttagtgccaagaacgtcacccttggtgttcccaggttg
agggaaatcattaatgtagccaagagaatcaaaacaccctctctttcagtctatctaaaa
cctgaagctaataaaactaaggagagagccaagactgttcaatgtgctttggaatatact
actcttaggagtgtcacacaagcgacggaagtatggtatgatcctgacccaatgagcacg
attattgaagaggatatggattttgtgaaatcctactatgagatgccagatgaagaaatt
gcgcccgagaaaatctccccatggttgctccgtatagagttgaatcgtgaaatgatggtg
gataagaaacttagcatggcgaatattgccgagaagatcaaccttgaatttgatgatgat
ttgacttgcatatttaatgatgataatgctgagaagcttatacttcgtatccgtatcatg
aacgatgaagccccaaagggtgagttgaatgatgaatcagctgaagacgatgtgttcttg
aagaaaattgagagcaacatgctaaccgaaatggctcttcggggaataccagatatcaac
aaggttttcattaagtgtggtaaagtgaacaagtttgatgagaatgaagggtttaagcca
gagatggagtggatgttggatacagaaggtgtcaatcttttagcagttatttgtcatgaa
gatgttgatgcgaggaggaccaccagcaaccatttgattgaagttattgaagttcttggg
attgaagcagttcgacgttccctcctagatgaattgcgtgttgttatctcctttgatgga
tcttatgttaattaccggcatcttgccatcctttgtgacaccatgacttatcgtggccac
ctgatggctattactcgtcatggtatcaaccgaaatgatactggaccgatgatgagatgc
tcatttgaagaaactgtggatattttacttgatgctgcagtatatgctgaaactgatcac
ttgaggggtgttactgaaaatataatgttgggtcaactcgcacccataggaacaggaggt
tgtgctctgtatctcaatgatgagatgttgaagaatgctattgaactccagctgcctagt
tacattgatggtctggagtttggcatgacaccttcccgttccccgatctcaggaactcct
tatcatgaagggatgatgtctcctagttatttgttgagcccgaatctccgcctctcacct
attagtgatgctcaattttcaccctatgttggaggaatggctttctcgcctacttcgtct
ccgggatatagcccatcatctccgggctacagtccatcatcccctggctatagtcctacc
tcccctggttatagccccacttccccgggatatagccctacctctcctggctacagtcca
acatctccaacctacagtcctagttcgcctggttacagcccaactagtcctgcatattct
cctacgagtccatcttattcacccacctctccaagttacagccccacctctccaagttac
agccccacctctccaagttacagccccacctctcctagttacagcccaacatctccaagt
tacagccccacttcgccggcttacagtcccacttctcccgcttatagtcccacttcacct
gcatatagcccgacttcaccctcctacagcccaacttcaccctcctacagcccaacttcg
ccttcctatagccccacatcaccctcctacagcccaacatccccgtcctacagccctaca
tcaccttcctacagccccacctctccagcatatagccccacctcccctggctatagcccc
acgtcaccaagctacagtcccacttcgccgagctatagtccgacatcaccaagttataat
cctcaatcagctaaatacagcccatcacaggcctactcacccagtagtccacggttgtct
ccatcaagtccctatagcccaacctccccgaactacagtccaacatcaccatcatattca
cctacgtctccggcatattctccatcaagcccaacctacagtcctagcagtccatataac
acaggagccagcccagactacagccccagttctccacaatatagtccaagtgcaggatac
tcacctactgctcctggatattctccgtcatctactagtcagtacacctcacaaacaact
gacaaggatgataggagtagaaaggacgataggagcaatcgatga
DBGET
integrated database retrieval system
