KEGG   Cucurbita moschata (crookneck pumpkin): 111435558
Entry
111435558         CDS       T05248                                 
Name
(RefSeq) exosome complex component RRP43
  KO
K12586  exosome complex component RRP43
Organism
cmos  Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cmos00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    111435558
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cmos03019]
    111435558
Messenger RNA biogenesis [BR:cmos03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     111435558
SSDB
Motif
Pfam: RNase_PH RNase_PH_C SPRY
Other DBs
NCBI-GeneID: 111435558
NCBI-ProteinID: XP_022928740
UniProt: A0A6J1ESF5
LinkDB
Position
Unknown
AA seq 304 aa
MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA
NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI
SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI
PFVALNDDGKVVFVSEEEGGENFEKEAVNKEKRKLKLNSLPFSLTCLLHKNYILADPTAE
EESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQMILDEAISG
MEID
NT seq 915 nt   +upstreamnt  +downstreamnt
atgggactgccaaatgctgcttctggggacttgtcgtcggaaatggaggttgatgctttt
agaagactctttccaattcagttttttgagcgtcatctcgctgaatcaatacgtcctgat
ggaagagcactgggaaaagctagagatacaaccattgctcttggaccagtatcatctgcg
aacggatcagccctggctaaggttggttctacgacaatgttggctgctattaaaatggag
gtaatgacgccttccatagagtcaccggatgagggttgcatagctgtcgatttccacatg
ccccccatatgctctccaattgttaggcctgggagaccagctgaagcagcacctgtgatt
tcaaagcagttatctgacactatttcaagttctgggatgattgatctgagagaactatct
cttgttaaaggaaaagctgcgtggatggcatacttggatatttactgtttggatgccgac
ggatctctattcgatgctgcacttctttctgcagctgctgcattttctcacttgcaaatc
ccttttgtggctctaaatgacgatggaaaagtagtatttgtctctgaggaagaaggggga
gaaaactttgagaaggaagctgtcaataaagagaaaaggaaactgaaattgaactccctt
cctttctcattaacatgcctactccacaagaattacatcttggctgaccctactgcggag
gaggagtctgtcatggaaactattgtaaccgtggtcttggattcatctggtcaactagtg
tccttctacaaaccgggtggatctgtgcttgcctatacatcagctgttcaggattgtgtt
gcactgacgagacaaagatcaaaagaactacagatgattttggatgaagcaatttctggt
atggaaattgactaa

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