Cucurbita moschata (crookneck pumpkin): 111436253
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Entry
111436253 CDS
T05248
Name
(RefSeq) U3 small nucleolar RNA-associated protein 21 homolog
KO
K14554
U3 small nucleolar RNA-associated protein 21
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
111436253
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cmos03009
]
111436253
Ribosome biogenesis [BR:
cmos03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
111436253
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Utp21
WD40_Prp19
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
ANAPC4_WD40
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_WDR75_1st
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
WD40_MABP1-WDR62_1st
Beta-prop_IFT140_1st
Beta-prop_HPS5
Beta-prop_DCAF4
Beta-prop_Vps41
Beta-prop_TEP1_C
Beta-prop_WDR19_1st
Beta-prop_SPT8
Beta-prop_IFT122_1st
NBCH_WD40
Beta-prop_EIPR1
Beta-prop_VPS8
PEP5_VPS11_N
WD40_like
WD40_RFWD3
VPS8_N
Beta-prop_SCAP
Ge1_WD40
Nbas_N
Beta-prop_IP5PC_F
VID27
Beta-prop_LRRK2
Motif
Other DBs
NCBI-GeneID:
111436253
NCBI-ProteinID:
XP_022929764
UniProt:
A0A6J1EPQ3
LinkDB
All DBs
Position
Unknown
AA seq
907 aa
AA seq
DB search
MGIFEPYRAIGYITNSVPFSVQRLGTETFVTVSVGKAFQVYNCAKLNLVLVGPQLPKKIR
ALASYREYTFAAYGSDIAVFKRAHQVANWSSHNAKVNLLLLFGDHILSVDINGNMFMWHF
KRNEDSPSPVGQVTLEGQFSPSCIMHPDTYLNKVMLGSLEGSLELWNISSKKKLYEFKGW
NSSVCCCVSSPALDVVAIGCADGKVHVHNIRYDQELFSFTHSTRGSVTALSFSSDGQPLL
ASGGSSGVISIWNLEKRRLQSVIREAHDSSIVSLHFFANEPVLMSSSTDNSIKMWIFDTT
DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKR
AKKLKLKEEEIKLKPVIGFDCAEIRERDWCNVVTCHVDTPQAYVWRLQNFVLGEHILKPC
PENPTPIKACAISACGNFAFLGTEGGWIERFNLQSGASRGSYLDKKEGRNAAHIGEVVGL
ACDSTNTHVISAGVGGDIKVWNFKERDLKSRWEIGSSVVKIVYHRVNGLLAVVTDDLVIR
LFDIVASRMVRKFEGHTDRITDLSFSEDGKWLLTSSMDGSLRIWDVILARQIDALQVDAS
ITAFSISPNMDILATTHVDQNGVYLWVNQLMFSGSSNVDTLASGKDIVNVKLPSVSSTEG
MEFEDRNENPSKPPESKDLSGFHISSQQIPDLITLSLLPRSQWQSLVNLDIIKARNKPIE
PPKKPEKAPFFLPSLPSLSGEILFKPSESANTERAEKGVDNEEHKKSDITSSQFLQILES
SSEVQNFSAFTDYIKGLSPSTLDLELRMLQIIDDDERQEPEKRPELISIELLLDYFIHEI
TCRNNFEFIQASIRLFLKIHGETIRCQLTLQEKARKLLDIQSSVWQGLDKIFQSSRCMVT
FLSNSQF
NT seq
2724 nt
NT seq
+upstream
nt +downstream
nt
atgggaatatttgaaccttacagagcaattggttacattaccaacagcgtccccttctct
gtgcagagactcggaaccgaaaccttcgtcaccgttagcgttggcaaagcttttcaagtt
tataattgcgcgaagttaaacttggtgctcgttggccctcaattgccgaagaagattcga
gctcttgcttcctaccgtgagtacacgtttgctgcttatgggtctgacattgcagttttc
aagcgtgctcatcaggtagcaaattggagtagccataatgccaaggtcaacttgttgcta
ttgtttggagatcacatcctaagtgttgacattaatggaaatatgttcatgtggcatttc
aaacggaatgaagatagtccttctccagttggacaagtcacactagaaggacaatttagt
cctagctgtataatgcatccagacacatatctaaacaaagttatgcttggaagtctggag
ggttctttggagctttggaacatcagctcaaagaaaaaactctacgagttcaagggatgg
aattcatccgtatgctgttgtgtttcgtctcctgctctagatgttgttgccattggctgt
gctgatggaaaggttcatgttcataacattcgttatgatcaagaattattttcgttcaca
cactcaacacgaggatctgttactgccttatctttcagctcagatggacagcctcttcta
gcatctggaggttcatcaggtgttattagcatatggaatcttgagaagagaagacttcaa
tcggtcattagagaagctcatgatagctcaatagtttcacttcacttttttgctaatgag
ccagtcctgatgagttcatcaacagataattccatcaaaatgtggatttttgatacaaca
gatggagatcctcgtttgttacgctttcgcagtggacatagtgcccctcctctatgcata
aggttttatgcaaatgggagacacattttatctgctggtcaggatcgtgccttcaggctt
ttctctgtaatccaggatcagcaaagtagggagctttctcaacggcatgtggctaaacgt
gcgaagaaactaaaacttaaggaagaagaaataaagttgaagcccgtcataggttttgat
tgtgctgaaattagagagcgtgattggtgcaatgtggttacatgtcatgttgatactcca
caagcatacgtatggagacttcaaaactttgttctcggcgagcatatcttgaaaccatgc
ccagaaaacccgacgccaattaaggcttgtgcaatcagtgcatgtggaaattttgctttc
ttagggacagaaggtggttggattgagcgattcaatcttcaatcgggtgctagtagaggt
agttacttggataaaaaggaaggaagaaacgctgcacatattggagaagttgtcggtctt
gcttgtgattctacaaatacccacgttataagtgcaggagttggtggagatataaaggtt
tggaatttcaaggagcgtgatctaaaatccagatgggaaattggtagttctgttgtgaag
attgtctatcatcgagtaaatggacttttggcagtggtaactgatgatttggttatccgt
ctgtttgacattgtggcttcaagaatggttcgtaaatttgaaggtcatacagatcgtata
acagatttgtctttcagtgaggatggaaaatggcttttaacatctagtatggatggaagt
cttagaatttgggacgtcattttagcaaggcaaatcgatgcactacaagttgatgcttcc
attactgcattttctatttctccaaatatggatatcttggcgactacacatgtagatcaa
aatggagtctacctctgggtgaatcaattaatgttctctggttcatcaaacgtggatacc
cttgcaagtggaaaggatattgttaatgttaaattgccatcagtctcctccacagaagga
atggagttcgaagatcgcaacgagaatccttcaaaacctcctgaatctaaagatttatca
ggctttcacatctctagccagcaaatcccagatttaattacactttcactgttgcccaga
agtcagtggcagagcttggtcaatttggacataataaaggcccgtaataaaccaatcgaa
cctccaaagaaacccgaaaaggctcctttcttcctgccatctcttccttctctctctgga
gaaatactatttaagccttctgagtcagcaaacacagagagagcagaaaagggagttgat
aatgaagaacacaaaaaatcggatataacatcgtctcaattcttgcagattcttgaatct
tcttctgaagtacagaacttctcagcctttactgattacataaagggtttatctccatca
acattggatttggaacttcgcatgcttcaaattatagatgacgatgagcgtcaagaaccc
gaaaagagacctgaacttatttcaattgaattgcttcttgattatttcatacacgaaatt
acttgccgcaacaatttcgagttcatccaagcctctatcagattgttcctgaagatacac
ggcgagacgattcgttgccagttgacattgcaggaaaaggcaaggaaactcctggatatt
cagagctcagtatggcaaggtttggataaaatattccaatcctctagatgtatggttact
tttcttagcaactcacagttttag
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integrated database retrieval system
