Cucurbita moschata (crookneck pumpkin): 111436255
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Entry
111436255 CDS
T05248
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111436255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmos03019
]
111436255
03041 Spliceosome [BR:
cmos03041
]
111436255
03009 Ribosome biogenesis [BR:
cmos03009
]
111436255
03016 Transfer RNA biogenesis [BR:
cmos03016
]
111436255
Enzymes [BR:
cmos01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111436255
Messenger RNA biogenesis [BR:
cmos03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
111436255
Spliceosome [BR:
cmos03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
111436255
Complex C
U4/U6.U5 tri-SnRNP related factors
111436255
Ribosome biogenesis [BR:
cmos03009
]
Eukaryotic type
Pre-60S particles
Helicases
111436255
Transfer RNA biogenesis [BR:
cmos03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
111436255
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
Motif
Other DBs
NCBI-GeneID:
111436255
NCBI-ProteinID:
XP_022929766
UniProt:
A0A6J1EP26
LinkDB
All DBs
Position
Unknown
AA seq
1014 aa
AA seq
DB search
MEESPTLGKRKELEEESAVVETGNNQETSSNKRPKESKNLEDVKETPTQETVSNRRSLTR
TCVHEVAVPAGYTSTKDESLHGTLSNPVFNGTMAKTYPFTLDPFQQVSVSCLERNESILV
SAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELSQEFKDVGLMTGDVTLS
PNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMRDRERGVVWEESIIFLPPAIKM
VFLSATMSNATEFAEWICNIHKQPCHVVYTDFRPTPLQHYVFPVGGNGLYLVVDENEQFR
EDNFMKLLDTFAKQKQIAGHRTSNGKSSGRIAKGGSGSGGSDIYKIVKMIMERNFQPVIV
FSFSRRECEQHAMSMSKLDFNTDEEKDTVEHVFRNAILCLNEEDRELPAIELMLPLLQRG
IAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAFKKWDGDSHRF
IGSGEYIQMSGRAGRRGKDDRGICIIMIDEQVEMGTIKDMILGKPAPLVSTFRLSYYSIL
NLMSRAEGQFTAEHVIRHSFHQFQHEKALPDIGKRVSKLEEEAATLDASGEAEVAEYHNL
KLDIAQLEKKMMSEITRPERVLYFLLPGRLVKVREGGTDWGWGVVVNVVKKPSAGLGILP
SRGGAYIVDTLLQCSPCLSENSSRPKPCPPRPGEKGEMHVVPVQLPLISALSKLRISIPS
DLRPVEARESILLALEELGTRFPQGFPKLNPVKDMSIEDPEIVELVKQIEELERKLYAHP
LHKSHEVDQIKCFQRKAEVNHEIQILKTKMRDSQLQKFRDELKNRSRVLKKLGHIDADGV
VQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQIASLASCFIPGDKSNEQIQLRTELA
RPLQQLQDSARRIAEIQHECKLEINVEEYVESTVRPYLMDVIYCWSKGASFSEVIQMTDV
FEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGIMFANSLYL
NT seq
3045 nt
NT seq
+upstream
nt +downstream
nt
atggaagaatctcccacgcttggaaagcggaaagaacttgaagaagaatcagctgtcgta
gaaactggcaacaaccaagaaacgagctccaataagcgacctaaagaatcgaaaaaccta
gaagatgtgaaggaaactccgactcaggaaactgtctccaaccgacgcagtttgacgcgg
acttgtgttcatgaagttgcggtcccggctgggtacacttctaccaaggacgagtcgctt
catggaaccctatcgaatccggttttcaatggtacaatggcgaaaacgtacccgtttaca
ctcgacccgtttcagcaggtatcggtttcttgcttagaacggaatgaatctattttggtt
tctgctcatacttcagctggaaaaactgcggttgctgaatatgccattgctatggctttt
agagacaagcagagggttatatatacttccccactgaaggctttgagtaatcaaaagtat
agggaattgagtcaagagtttaaagacgtgggactaatgactggggatgtgactctttcg
cctaatgctagttgtttagttatgacgacggagatacttagggggatgctttacaggggt
tcggaagttttgaaggaagtagcatgggtaatttttgatgaaattcactatatgagagat
cgggaaagaggtgttgtttgggaagagagtataatatttttaccaccggctatcaaaatg
gtcttcctttctgcaacaatgtccaatgccacggagtttgctgagtggatatgcaatata
cacaagcagccttgtcatgtggtgtacactgattttcgaccaactcccttgcaacattac
gtttttcccgtgggtggcaatgggttgtatctcgtggttgatgaaaacgaacagttcagg
gaggataattttatgaagttgctggatacatttgctaaacaaaaacagattgctggccac
aggacttcaaatgggaaatctagtgggagaatagctaaaggtggcagtggttccggaggt
tcggacatttataaaattgttaagatgattatggaacggaatttccaaccagttattgtc
ttcagtttcagtagaagagaatgtgaacaacatgcaatgtccatgtccaaacttgacttt
aacactgatgaagaaaaggacacggtggaacatgttttcagaaatgcgattctctgcttg
aatgaggaagacagagagctacctgcaattgagctaatgttacctcttctccagagagga
attgctgttcatcattctgggcttcttcctgtaattaaagaattagtagagctccttttc
caggaaggtcttgttaaggccctttttgccacagaaacttttgccatgggtttgaacatg
ccagcaaaaacagttgtcttcactgcctttaaaaagtgggatggtgatagtcaccgattt
attggatctggtgagtacattcagatgagtggaagggctggacgtcgtggaaaagatgac
aggggaatatgtattataatgattgatgagcaggtggagatgggaacaattaaagatatg
attttgggcaaaccagctcctcttgttagtacttttagactgagctactactcgatttta
aatttaatgagccgggctgaaggccaatttacagctgagcatgttattagacactcattt
catcagtttcagcacgagaaggcattgcctgatattgggaaaagagtgtcgaagttagag
gaggaagctgccacacttgatgcttcaggagaggctgaagttgctgaataccacaactta
aagcttgatatagcacaacttgagaagaagatgatgtctgaaataacaaggccggaaaga
gttctctattttcttcttcctggtcggttggttaaggtaagagaaggggggacagactgg
ggttggggagttgtagttaacgttgttaaaaagccctcagctgggttaggcatcttgcct
tcacgtggtggtgcttatatagtggataccttactccaatgctctccttgtctaagcgag
aatagttcacgaccaaaaccttgtccaccccgtcctggagaaaagggtgaaatgcacgtg
gttccagttcagctgcctcttatttcagccttgagcaaactcagaatctctattccttct
gatctcagacccgtggaagcaagggaaagcatactgcttgcattggaagaactgggaact
cgttttccacagggttttccaaaattgaatccagttaaggacatgagtattgaagatcca
gaaattgttgagttggtgaagcagattgaggaacttgagcggaaattatatgctcatcct
ctgcataagtcacatgaagtggaccagattaaatgttttcagaggaaagcggaggttaat
catgaaattcaaatactcaagaccaaaatgcgcgattcccagcttcaaaaatttcgtgat
gaactgaagaaccgttctcgggtcctgaaaaagcttggtcacattgatgcagatggtgta
gttcagttgaaggggcgtgcagcctgcttgattgacacaggagatgagctccttgttact
gaattaatgtttaatggaacattcaatgacctagatcatcaccagattgcatcccttgca
agttgttttataccaggagacaagtccaatgagcagatacagttaagaaccgagcttgct
agaccattacagcaactccaagatagtgcgagaagaatagctgagatacaacatgaatgc
aagttggagataaatgtggaagaatatgtggaatcaactgtaaggccgtatttgatggat
gtcatttactgttggtcaaagggagcgagtttttcagaggtgattcaaatgacagatgtt
ttcgagggtagtatcattcgaagtgctagaaggcttgatgaattcttgaatcagttgcgt
gctgctgccaatgctgtgggggaggtaaccttagagagtaagttttctgcggccagtgac
agcctccgcagaggtataatgtttgcaaactcactctatctgtag
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integrated database retrieval system
