Cucurbita moschata (crookneck pumpkin): 111436946
Help
Entry
111436946 CDS
T05248
Name
(RefSeq) WD repeat-containing protein 43
KO
K14546
U3 small nucleolar RNA-associated protein 5
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
111436946
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cmos03009
]
111436946
Ribosome biogenesis [BR:
cmos03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
111436946
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
Beta-prop_WDR5
Beta-prop_THOC3
Beta-prop_WDR3_1st
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_WDR36-Utp21_1st
WD40_WDHD1_1st
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR3_2nd
Beta-prop_WDR36-Utp21_2nd
Utp12
WD40_MABP1-WDR62_1st
ANAPC4_WD40
Beta-prop_TEP1_2nd
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_EML
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
Beta-prop_ACSF4
WD40_Gbeta
Beta-prop_Vps41
Beta-prop_VPS8
Beta_prop_At2g24240
Beta-prop_HPS5
PQQ_2
Beta-prop_WDR19_1st
Beta-prop_NOL10_N
Motif
Other DBs
NCBI-GeneID:
111436946
NCBI-ProteinID:
XP_022930515
UniProt:
A0A6J1EX27
LinkDB
All DBs
Position
Unknown
AA seq
626 aa
AA seq
DB search
MASSNIRDLLTSFSPDLHLFAISSGDGRIKIWDTLKGQIQTEFADFFTTDSTSILTKSGK
GHLSVDYKCMKWLSLEKKRKRKRQCSLLLLGTGSGDVMALDVAAGELKWKISDCHPGGVA
TISFPTHGSCIYTAGADGMLCEIDSVTGSLLRKFKASTKAISCISVSPDGKKIATAASQM
KIFNCSDHKKIQKFSGHPGAVRCMVFTEDGKYILSSGVGERYIVVWSLGGEKKQSASCVL
AMEHPAIFVDSRRSGGGGVDEAALYVLAISEIGVCYLWYGQNLEELRSVKPTKVLISNND
ISSKSKKRVTPSIYAAQFQGIPKSGSGQVFLAHGLLVKPSFQNVMVHSGTDITLNSSNDG
ILLPSHSVGKSKKVLDVQGGVVALDRANAEDALRPIPKVFDSQEKRTLYHDLHVDRDDVM
TELVDSGSQVKDVVGVEDSAAVCLEDKLRSLGILDSTDDHTSDSILKSAIFKGIDLEANM
SQKKLREAVLSLAPGDACKLLGNLVSIWQSRLRSGKNVLPWIYSLLLNHNQHILSQEQST
QILDSLFKITKSKETAVQPLLQLSGRLQLVLAQIERASANKTDQTVRHGPEIDGGESSND
EDDEEVDDVLYGEEEYESELSSDNEN
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgtcgaatatcagagatctgttaacatcttttagtcctgatttgcatttgttt
gccatcagctcgggagatggtcgtatcaagatctgggacacgttgaaaggtcagatacag
acggagtttgcagatttctttacaaccgattcaacgagcatactaacgaaatcaggaaaa
gggcatctatctgttgattataaatgcatgaaatggttgtcattggagaaaaagagaaaa
agaaagcgccaatgttcgttgttgttgttaggaactggtagtggtgatgttatggctctt
gatgtagcagctggggaattgaagtggaaaataagtgattgtcatcctggtggtgttgct
acaatttcgtttcctacacacggttcgtgcatttatactgctggtgctgatggaatgcta
tgcgaaattgattctgtgacgggaagcctgttgaggaagttcaaggcttcgacaaaggca
atatcctgtatttctgtttctccagatggaaagaaaatagcaactgcagcctcgcaaatg
aagattttcaattgttctgatcacaaaaagatacagaagttttccgggcatcctggagct
gttcgatgtatggtttttaccgaagatggaaaatacattctttcatccggggttggtgaa
aggtatatcgttgtttggagtttaggcggagagaaaaagcaatcagctagttgtgttctc
gcaatggagcaccctgccattttcgtggacagcaggcgctcgggtggtggtggagttgat
gaagctgcgctgtacgttttggctatatcagaaattggtgtttgttatttatggtatgga
cagaatctcgaagagttacgaagtgtcaagcctactaaagtattgatatctaacaatgat
atttcctccaagagtaaaaaacgggtaacaccttctatttatgctgcacaatttcaagga
attccgaaatctgggtcgggccaggttttccttgctcatggattgctggtgaaaccttca
tttcaaaacgtcatggtgcactccggtactgacataactttaaacagctccaatgatgga
attcttctgccgagtcattcggtcggaaaatctaagaaggttttagatgtacagggagga
gtcgttgcattagatcgagctaatgctgaagatgccttgcgtccaattccgaaggttttc
gattctcaagagaaacgtaccttatatcacgatttacatgttgaccgcgatgatgttatg
accgaattggtcgacagtgggagccaagtaaaagatgttgtcggagtggaggactctgca
gcagtttgcctggaggacaaactccgatcgttgggcatacttgacagtacagacgatcat
acatctgactccatccttaagtctgcaatattcaaaggcatcgatcttgaagctaatatg
tcacagaaaaagttaagagaagcggttttatcgttagcaccgggcgatgcatgcaagttg
cttggtaacttggttagcatctggcaatccaggttgcgtagcgggaagaacgtcctaccg
tggatttatagtttattgttgaatcacaatcaacatatcttgtctcaagagcagtcaacc
cagattcttgattctttgtttaagattactaaatccaaagagactgcagttcaacctctt
cttcaattatcaggtcgtttgcaactggtgttggcacaaattgaaagggcgtcggccaac
aaaaccgaccagacggtacgacatggtcccgagatagatggaggggagagcagcaacgac
gaagacgacgaagaagtcgacgatgttctttatggggaagaagaatatgaatctgaatta
agcagtgataatgagaattag
DBGET
integrated database retrieval system