Cucurbita moschata (crookneck pumpkin): 111437483
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Entry
111437483 CDS
T05248
Name
(RefSeq) exosome complex component RRP4 homolog
KO
K03679
exosome complex component RRP4
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111437483
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmos03019
]
111437483
Messenger RNA biogenesis [BR:
cmos03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
111437483
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
111437483
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRP4_S1
KH_6
ECR1_N
RRP40_S1
DUF6123
Motif
Other DBs
NCBI-GeneID:
111437483
NCBI-ProteinID:
XP_022931250
UniProt:
A0A6J1EXY1
LinkDB
All DBs
Position
Unknown
AA seq
326 aa
AA seq
DB search
MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLN
GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVLM
LSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ
LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKGS
KFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLSISLNIDV
HEMLGSEFCVLTAEKEAERRTSSKKG
NT seq
981 nt
NT seq
+upstream
nt +downstream
nt
atgagaggattacaagtttccttgaatcaaacccagaagattcggcttcaaagagcccta
gaaacgctcgagtctatctcttcgaaagccaattccgatgcttcagttgtagttgctgat
actattcctctcaattacgaggatggtgtcctcaagggacatggaacccttgacttgaat
ggagaagtagttgccactatttgtggagtggttgagcgagtcaataagcttatctatgta
cgtgccttacgtgccagatataaaccagaggttggtgatatcatagtggggcgtgttacg
gaggttgctcccaaacgttggagattggatataaattatagccaagatgctgttttgatg
ctttcttctatgaacttgcctgatggtattcagaggaggcgaactgcagtggatgaactc
aacatgcggaccatttttgaagaaaatgatgttatttgcgcagaagttcgtggtttccag
catgatggcctacaccttcaagcaagaagccagaaatatgggaagcttgaaagaggtcag
ctgctcacagtttcaccgtatctagtaaagagacgcaaacagcacttccatcatttggag
cagtatggtattgacttaatacttggatgcaatggatttatctggattggggagcatgtt
gatcctacagaggatatgatggtagaagatccaattaataaatctgaacagaagggttca
aaatttgaaggaagttttggtaaccaagtgcaagaaagaatatatactccattggagaca
cgtcagaatatatgcagaactgcaaacgccattcgagtattgtctatcttaggtttcata
atgtcagtagaagtcataatggagacagtaagtctaagtatttctctgaacatcgatgtg
catgaaatgcttgggtcggagttctgtgttctcactgcagaaaaagaggctgagcggcgg
acttcgagtaagaagggatga
DBGET
integrated database retrieval system
