Cucurbita moschata (crookneck pumpkin): 111437775
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Entry
111437775 CDS
T05248
Name
(RefSeq) nuclear cap-binding protein subunit 1-like
KO
K12882
nuclear cap-binding protein subunit 1
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03013
Nucleocytoplasmic transport
cmos03015
mRNA surveillance pathway
cmos03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111437775
09122 Translation
03013 Nucleocytoplasmic transport
111437775
03015 mRNA surveillance pathway
111437775
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmos03019
]
111437775
03041 Spliceosome [BR:
cmos03041
]
111437775
Messenger RNA biogenesis [BR:
cmos03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
111437775
Spliceosome [BR:
cmos03041
]
Common components
Common spliceosomal components
Cap binding complex
111437775
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G_like
MIF4G_like_2
MIF4G
TPR_MLP1_2
DUF4349
CCDC93_CC
DUF4407
DUF5798
Motif
Other DBs
NCBI-GeneID:
111437775
NCBI-ProteinID:
XP_022931611
UniProt:
A0A6J1EU52
LinkDB
All DBs
Position
Unknown
AA seq
867 aa
AA seq
DB search
MSSWKSLLLRIGDKSPEYGTSSDFKDHIETCFGAIRRELDHYGDEVLPFLLQCVEQLPHK
TPLYGTLIGLINLENEDFVKKIVDQTHKSFQDALNTGNCHGIRILLRFLTTLMSSKVLLS
TSLVVVFETLLSSAATTVDEEKGNPAWQARADFYISCILSCFPWGGAELVEQVPEELERV
MVGVEAYLSIRRHTVDTGLSFFEDAGEVEKTLNEKDFLEDLWGRIQALSSDGWKVDSVPR
PHLLFEAQLVAGKSHEFGSISCPEQPDSPSTPSGITYGKQKYDAELSYPQRIRRLNIFPS
SKFEDLQPIDRFVVEEYLLDVLLFFNGCRKECASFMVGLPVPFRYEYLMAETIFSQLLML
PQPPFKPIYYTLVIIDLCKALPGAFPAVVAGAVRALFEKIADLDMECRIRLILWFSHHLS
NFQFIWPWEEWAYVLELPKWAPQRVFVKEVLDREVRLSYWDKIKQSIENAPGLEELLPPK
GGPNFKFSTEDDGEKNEQHALSAELYNMVKGRAAAREVISWLDETVIPKHGFDVSLVVIV
QTLLDIGSKSFTHLITVLERYGQVISRICPDQDKQVLLISEVSSYWKNNTQMTAIAIDRM
MGYRLISNLAIIRWIFSPENIEQYHTSDRPWEILRNALCKTYNRISDLRKEISSLKKDIV
AAEEAVAKTQDELNAAESKLALVDGEPVMGENPVRLKRLKSYAEKAKEQEESIRDSLEAK
EALLARALEENETLFLSLYKSFSSILTERLPAASSVQTLQDLKSINPTDTNAMDLEEEPA
AMDMDNEDSRPEKSQVNGGTEHAYTVGENEQWCLTTLGYVKAFSRQYASEIWPHIEKLDA
EVLLSEDAHPLFRKAVYCSLRRSMDSI
NT seq
2604 nt
NT seq
+upstream
nt +downstream
nt
atgagcagctggaagagtcttcttcttcgaattggcgacaagtccccggaatatggcacc
tcctccgacttcaaagaccatattgaaacttgctttggtgcgattcggcgggagttggat
cactatggagatgaagttttgcctttccttctacaatgcgttgaacaattgcctcataag
actcctttgtacgggacattgattgggttaataaacttggaaaatgaagacttcgtgaag
aaaattgtggaccaaactcacaaaagttttcaggatgccttaaacactggaaattgccac
gggattcgaattttgttacgctttctaactaccctgatgagcagtaaagtcctgctgtcc
acttctctagttgttgtttttgaaacattattatcttcagctgccacaacagtggatgaa
gagaagggaaaccctgcatggcaggcacgcgctgacttttacatatcttgcattctctcc
tgttttccctggggaggagctgaactggttgagcaagttcctgaagagctcgagagagta
atggttggagtagaagcttacttaagcattcgaaggcataccgtggacactggtttatcc
ttttttgaggatgctggtgaagttgagaaaactcttaatgagaaggattttttagaagat
ttatggggacgcatacaagcgttatctagtgatggatggaaagtggatagtgttccaagg
ccccaccttctatttgaagctcagctagttgctggtaagtctcatgaatttggaagcatc
agctgtccggagcaacctgattcaccttcaacaccttctggcattacttatggtaaacag
aagtatgatgcagagttaagttatcctcaaaggatacgtcggcttaatatatttccatca
agtaaatttgaggatctgcaacctattgatcgttttgtcgtggaggagtatcttttagat
gtgcttcttttcttcaatggctgtcgaaaggaatgtgcgtctttcatggttggtctccct
gtaccttttagatatgagtatcttatggcagagacaatcttctcgcagttactcatgcta
ccacaaccaccattcaagcctatttattatacgctggtcattattgacctttgtaaggct
cttcctggggcctttcctgcagttgtagctggtgcagttcgtgctctgttcgagaaaata
gctgatctagacatggagtgccgcatacggctaatactttggttttcacaccatctatca
aattttcaatttatatggccatgggaagaatgggcatatgttttagaacttccaaaatgg
gctccacagcgagtgtttgttaaggaggttctggatagagaagttcgtctatcatactgg
gataagattaagcagagcattgagaacgcgcccggtttagaagagttgctacctcccaag
ggcggaccaaacttcaaattttctacagaagacgacggagaaaaaaatgaacaacacgca
ctttctgctgaattatacaatatggtgaaaggacgggctgcagcacgggaagtaatttca
tggctcgatgaaactgtaattcctaagcatggttttgatgtttcgctcgtggtgatcgtg
caaactcttctagatattgggtcaaagagtttcacccatttgataacagttttggagaga
tatggtcaagtgatatcaagaatatgccctgatcaggataagcaggtcttgcttatatct
gaagtgagttcttactggaagaacaatactcaaatgacggcaatagcaattgatagaatg
atgggttacaggttaatatccaatttggccattatcagatggatcttttctccagaaaac
atcgagcagtatcatacgtcagatcgtccatgggagatattaaggaatgcgttgtgcaag
acgtataatcgtatttccgatcttaggaaagaaatatcctccctgaagaaagatattgtg
gcagctgaagaagctgtagcgaagacacaagacgagttgaacgctgctgaatcgaagctc
gcacttgtcgatggtgaacctgttatgggagagaatcctgtaagactgaagcgattgaaa
tcctatgctgaaaaagcaaaagagcaggaagaatcgatacgagactcgttggaagccaaa
gaagctcttcttgcccgagcactcgaggagaacgagacattatttctatccttatacaaa
agcttctccagtatattgaccgaacgccttccagcggcatctagcgtacaaacgctgcag
gatttgaagtctattaatccaaccgatacgaatgctatggacctcgaagaagaaccagca
gccatggatatggacaatgaagattcaagacctgaaaaaagtcaagtgaacggtgggaca
gagcatgcttacactgtaggtgaaaatgaacaatggtgtttaacaaccttaggatacgtc
aaggccttctcgagacaatacgcttccgagatatggccacacattgagaagttggatgca
gaagtcttgttatcagaagatgcacacccgcttttcaggaaagcagtctactgcagccta
cgtcgatctatggactcgatctaa
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