Cucurbita moschata (crookneck pumpkin): 111439142
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Entry
111439142 CDS
T05248
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111439142
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmos03019
]
111439142
Messenger RNA biogenesis [BR:
cmos03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111439142
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
111439142
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
DUF4407
Motif
Other DBs
NCBI-GeneID:
111439142
NCBI-ProteinID:
XP_022932652
UniProt:
A0A6J1F2R9
LinkDB
All DBs
Position
Unknown
AA seq
900 aa
AA seq
DB search
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNSNQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALLDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK
TDPKEKAKSETRDWLNNLVSELESQIDNFEAEMEGLSVKKGKSRPPRLIHLETSITRHKA
HIMKLELILRLLDNDELSHEDVNDVREFLEDYVERNQEDFDEFSDVDDLYSSLPLDKVES
LEDLGTICPPSLVKGTTALSLKTTLATTGTQVPVTVAPNHQPNTVTQDQVDDSTLPDGNT
DTLLKTPPPKNSVLGSSAATTPTGNHAASTSLNGAVHGSGLSATSAILPGSSSVRAVEAT
GAPNSSPVNMPTSAKDEEIASFPGRKLSPSFADTGLVRGGMGRGVTANQPASSSTHTSGI
VVPSTITLGNVSSASEVTKRNILGSEERAGNSGLVQSMVSPLSNRMVLPTAAKPSDGTSS
VDPSNVSDAAAIGSRVFSPVVPSMQWRPGSSFQNPNEGGQFRGRAEIAPDQREKFLQRLQ
QVQQQGHSTLLSMNLGGGNNKQFSSQQQSSLLQQFNSQNSSVSSQAGLGIGVQAPGVNVV
TSGSLQQQPSSFQQSNQQALLTSGAKESDVAPVKVEEQQQPQQQQSLPEDTTTDSAAGSV
LGKNLMSDDDLKGAYPVDTPVGVPVSLTETASVSREDDLSPGQPLQHGQPSKSLGVIGRR
SVSDLGAIGDNLGGSSLTTSGMHDQFHNLQMLEAAFYKLPQPKDSERPRSYTPRHPAVTP
PSYPQVQAPIINNPALWDRLGLETYGTDTLFFAFYYQPNTYQQYLAARELKKQSWRYHRK
YQTWFQRHEEPKVATDEYEQGTYVYFDFHFNNDDLQHGWCQRIKTEFTFEYNYLEDELNI
NT seq
2703 nt
NT seq
+upstream
nt +downstream
nt
atgggtgcgagtcgaaagcttcaaggggagattgaccgagttcttaagaaggtccaagaa
ggggttgacgtctttgacagcatttggaacaaggtttatgataccgacaattccaatcag
aaggagaagttcgaggcggatttgaagaaggagataaagaagcttcagaggtacagggac
caaattaagacctggattcagtccagtgagattaaggacaagaaggtcagtgcctcttat
gagcaggctttgttggatgctcgtaaacttattgagcgcgaaatggaaagatttaagatt
tgtgaaaaggagacgaaaaccaaagccttctcgaaagaaggtttgggtcaacagcctaaa
actgacccaaaggagaaagctaaatcagagacacgagattggttgaacaatttggttagt
gagttggaatctcagattgataattttgaagctgagatggagggtctatctgtgaagaaa
ggaaaatcaaggccacctagattgattcatctggaaacttctattactcggcacaaggct
catataatgaagctggaactaatcttgagactgcttgataatgatgaattgagtcatgag
gatgtcaacgatgtcagggagtttttagaagactatgtggaaaggaatcaggaggatttt
gatgaattcagtgatgtggatgatctttacagctcattgccactcgataaggtggaatcc
cttgaagatctgggtacaatttgccctcctagccttgtgaagggtacaacagctctcagc
ttgaagactactttggcaacaacgggaactcaagtgcctgttactgttgctcctaatcat
caaccaaatactgtcactcaggatcaggttgatgattcaactttgccagatggtaacact
gatactcttttgaagaccccacctcctaagaatagtgtccttggttcttctgctgctaca
acacctaccgggaaccatgcagcctcaacttccttgaatggtgcagtgcatgggtctggc
ttgtccgctacatcagccattcttccaggttcaagttctgttcgtgctgtggaggctacg
ggtgctcctaattcatctccggtaaatatgcccacttctgcaaaggatgaagaaattgct
agcttcccaggccgtaaattgtctccatcatttgcggatactggacttgtaaggggtggc
atgggaagaggtgtcactgctaatcaaccagcctctagttccacccatacttctggtatt
gtggttcctagcactataactctcggtaacgtttcttctgcctctgaagtcacaaagaga
aacattttgggatctgaagaacgggctggtaacagtggcttggtgcagtctatggtttct
cctttaagtaatagaatggttttgcctacagcagctaaacctagtgatggaacgagctca
gttgatcctagcaatgttagtgatgcagcggctataggaagtcgagttttctctccagtg
gttcctagcatgcagtggaggccaggaagttcttttcaaaatccgaatgaaggaggacaa
ttccgtggaagagctgaaatagcgcctgatcagagagagaagttcttgcagcgtctgcag
caagttcagcaacagggtcatagtacacttcttagcatgaatcttggtggagggaacaac
aaacaattttcttcgcaacagcaaagttcacttctacagcagttcaactcccaaaattca
tctgttagttctcaagctggtctgggaattggagttcaagcaccaggagttaatgttgtt
acatctggttcattacagcagcagccaagttccttccagcagtctaatcagcaggcatta
ctgacaagtggggcaaaagaatctgatgttgcccctgtaaaagttgaagagcagcagcag
ccacagcagcaacagagtttacctgaagatactactactgattctgctgctggttctgtc
cttggaaagaatctgatgagcgacgatgatttaaaaggcgcatatccagttgatactcca
gttggcgtacctgtttcattgactgagactgcttcagtgtcgagagaggatgacctttct
ccaggtcaacctttacagcatggtcaaccttctaaaagtcttggtgtcattggccgaaga
agtgtttctgacttaggtgccattggtgataacctcggtggatcctcgttgactactagc
ggaatgcatgatcaattccataatttgcaaatgcttgaggctgcattctacaagctacct
cagccaaaagactcagagcgtccgaggagctacactccaaggcaccctgcagttactcct
ccgagctatcctcaagtgcaggcacctattataaacaatcctgctttatgggaccgatta
ggtcttgagacctatggcactgacacattgttctttgcattttactatcaaccgaacacc
tatcaacaatatttggctgctagagaattaaagaagcaatcttggagatatcacagaaaa
tatcagacatggttccaaagacatgaagagccaaaagttgctacagatgaatatgagcag
ggaacttatgtgtacttcgatttccattttaataacgatgatctacaacatggatggtgc
caaaggattaaaacagagttcacttttgagtataactaccttgaagatgaactcaacata
tag
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integrated database retrieval system
