Cucurbita moschata (crookneck pumpkin): 111439158
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Entry
111439158 CDS
T05248
Name
(RefSeq) probable RNA polymerase II transcription factor B subunit 1-1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03022
Basal transcription factors
cmos03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
111439158
09124 Replication and repair
03420 Nucleotide excision repair
111439158
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmos03021
]
111439158
03400 DNA repair and recombination proteins [BR:
cmos03400
]
111439158
Transcription machinery [BR:
cmos03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
111439158
DNA repair and recombination proteins [BR:
cmos03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
111439158
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BSD
PH_TFIIH
DUF3087
Motif
Other DBs
NCBI-GeneID:
111439158
NCBI-ProteinID:
XP_022932684
UniProt:
A0A6J1EXP7
LinkDB
All DBs
Position
Unknown
AA seq
595 aa
AA seq
DB search
MGTKYVQKSAKYKTSVKDPGTPGVLEMTERKFVFRPSDPTSASKLDVEFRFIKGHKNTKE
GSNKPPWLNLTRDQGGSYIFEFKNFSDLHVCREFVGSALAKSGEAPQAPSEKLVATFPHE
QLSKSEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLERDYSTKSKQLVGF
KSSMVLDTKPMSDGRTNKVTFNLTPEIKYQIFALKPAVHQAFLNHVPNKMSEKDFWTKYF
RAEYLHSTKNSIAAAAEAAEDEELALFLKDDEILAAETRKKIRRVDPTLDLEADLGDDYT
HLPDHGIFRDGGKEITESHNEQCRRTLSQDLNRQGAVVLEGRTIDVDLEDPRTVAEALVR
SRHAVEGNEKQIGLDRIARMTAIEDLQAPHSYPFAPLCIKDPRDYFDAQQANAIKTLDDT
RAGMQQTKCSLSTTEAYCSLRESISEIKSSGLNHPIIKPEVALMVYNGLTQNISSTKYQL
GKNPQESILESLPNPTKEELLHHWISIQELLRHFWSSYPITTSYLYTKVSRLKDAMSKIY
RQLEEIKETVQADFRHQVSLLVRPMHQALDAAFQHHDADLQKRSAKSGERPNGYT
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
atgggaaccaagtatgtccagaagagtgccaagtacaagacatcagttaaggatcctggc
acgccgggcgttttggaaatgacagagcgcaaatttgtatttagacctagtgaccccact
tcagcttctaagcttgacgtggagttcagatttattaaaggccataaaaacaccaaggaa
ggatcaaataaaccaccatggcttaatctcaccagggaccagggtggaagttacattttt
gagtttaaaaacttctctgatcttcatgtttgccgggagtttgtgggaagtgctctagca
aagtcaggagaggctccgcaagctccctctgagaagcttgtagccacatttccccatgaa
caactcagtaaatcagaaatggaacttcgaatgagatgtttgcaagaggatagtgaactg
cagaaacttcataaacaatttgttattggtggtgtgttgaccgaatctgagttttgggcg
gcaaggaagaaattactggaacgagactactccacaaagtcaaaacagttggttggtttc
aagagttcaatggttttggacaccaaaccaatgtctgatggtcggacaaacaaggtcaca
tttaatttgacaccggagatcaaatatcagatttttgctctgaaaccagctgttcaccag
gcattccttaatcatgttcccaataagatgtcggagaaagacttttggacaaaatatttt
agagcagaataccttcatagtacaaaaaattctatcgcggctgcagcagaagctgctgaa
gatgaagaacttgccctttttctgaaggacgatgaaatattggcagctgaaactcggaaa
aagattcggcgtgttgatcctacattggatttggaagctgatttaggagacgattacaca
caccttccagatcatggaatctttcgagatggtggcaaggaaataactgaatcacataac
gaacaatgtagaaggactctgtcacaagaccttaatcgtcaaggggcagttgttcttgaa
ggaagaactatagatgtagacttggaagatccaaggacagtagcggaagcacttgtgcgg
tccagacatgcggtagaaggaaatgagaagcagataggacttgataggattgctaggatg
acagcgattgaggatcttcaagcacctcatagctatccttttgctcctctttgtatcaag
gatcctcgagattattttgatgcccaacaagcaaatgccattaaaacattggatgataca
cgagctggaatgcaacaaactaaatgcagtttgagcactacagaagcatattgctctctg
agggaatccatatctgagatcaaatcttctggattgaatcatcccataattaaacctgaa
gttgcgcttatggtttataatggattaactcaaaatatttctagtaccaaatatcaacta
gggaaaaaccctcaggagagtattctggagagtttaccaaatcctacgaaggaagaactt
ctacaccattggatctctattcaagaattactgaggcacttttggtcgtcctatccaatt
accacatcatatctttataccaaagtgagcagattaaaggatgccatgtcaaaaatctat
cgacaattagaggagatcaaggaaaccgtgcaggcagatttccgccaccaagtatctctt
ctagttcgcccaatgcatcaggctctggatgctgcatttcaacatcatgacgccgacttg
cagaagagatcagcaaagagcggagaaaggcccaacggatacacatag
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