Cucurbita moschata (crookneck pumpkin): 111439249
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Entry
111439249 CDS
T05248
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111439249
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmos03019
]
111439249
Messenger RNA biogenesis [BR:
cmos03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111439249
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
111439249
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Motif
Other DBs
NCBI-GeneID:
111439249
NCBI-ProteinID:
XP_022932789
UniProt:
A0A6J1EY06
LinkDB
All DBs
Position
Unknown
AA seq
908 aa
AA seq
DB search
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNSNQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALLDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK
TDPKEKAKSETRDWLNNVVSELESQIDNFEAEVEGLSVKKGKQRPPRLVHLETSITRHKA
HIMKLELILRLLDNDELSPEQVNDVKDFLEDYVERNQEDFDEFSDVDELYSSLPLDKVES
LEDLVAICPPSLVKGTPALNLKTSVATLATQVPVTGAPNLQQNTVIPDQVDDSTLPDGNT
DTLLKNPPPKNSVLGSSAATSPTGNHATSASLNGAGHGSALSATSAILTGSSAVRAVLET
TGASNSSPVNMPTSAKDEEIASFPGRKLSPSFSDSGLVRGGMGRAVITNQPPSTSSHTSG
IVVPSTIILGSVPSTSEVTMRNIMGVEERAGNSGMVQSMVSPLSNRIVLPTAAKVSDGTT
TVDPSNVSDAAAIGGRVFSPSVVPSMQWRPGSSFQNPNEGGQFRGRAEIAPDQREKFLQR
LQQVQQQGHSTLLGMTLGGGNHKQFSSQQQSSLLQQFNSQNSSVTSQAGLGIGVQAPGVN
AVTSGSLQQQPTSFQQSNQQALMTTGAKDSDVAHSKVEEEQQQQQQQQSLPEDTTDSASA
SASASASVLGKNLMNDDDLKGSYAVDTPAGVPASLTETASVSREDDLSPGQPLQPGQPSG
SLGVIGRRSVSDLGAIGDSLGGSSMATGGMHDQFYNLQMLEAAYYKLPQPKDSERPRSYT
PRHPAITPPSYPQVQAPIINNPAFWDRLGLETYGTDTLFFAFYYQPNTYQQYLAARELKK
QSWRYHRKYQTWFQRHEEPKVATDEYEQGTYVYFDFHVNNDDLQHGWCQRIKTEFTFEYN
YLEDELNI
NT seq
2727 nt
NT seq
+upstream
nt +downstream
nt
atgggtgcgagtcggaagctccaaggggaaattgaccgagttcttaagaaggtacaagaa
ggggttgacgtctttgacagcatttggaacaaggtttatgataccgacaattccaaccag
aaggagaaatttgaggcggacttgaagaaggaaataaagaagcttcagaggtacagggac
caaatcaagacctggattcagtccagtgagattaaggataagaaggtcagtgcctcttat
gagcaggctttgttggatgctcgtaaacttattgagcgtgaaatggaaagatttaagatt
tgtgaaaaggagacaaaaactaaagccttctcgaaagaaggtttgggtcaacaacctaaa
actgatccaaaggagaaggctaaatcagagacacgggattggttgaacaatgtggttagt
gagttggaatctcagatagataactttgaagctgaggtcgagggtctgtctgtgaagaag
gggaaacaaaggccacctaggttggttcatcttgagacatccattacccggcacaaggct
catataatgaagctggaactaatcttgagactgcttgataacgatgaattgagtcctgag
caagtcaatgatgtcaaggacttcttagaagattatgtggaaaggaatcaggaggatttt
gatgaattcagtgatgtggatgagctttacagctcattgccacttgataaggtggaatcc
cttgaagatctggttgcaatttgccctcccagccttgtgaagggtacaccagctctcaac
ttgaagactagtgtggcaacgttggcaactcaagtgcctgttactggtgctcctaatctt
caacaaaatactgtcattccagatcaggttgatgattcaactttgccagatggtaacaca
gacactcttttgaagaacccacctcctaagaatagtgtccttggttcttctgcggctaca
tcacccaccgggaaccatgctacctcagcatccttgaatggtgcagggcatgggtctgcc
ttgtccgctacatcagccattcttacaggttcaagtgctgttcgtgctgtattggagact
acgggtgcttctaattcatctcctgtaaatatgcccacttctgcaaaggatgaagaaatt
gctagcttcccaggccgtaaactatctccatcattttcggattctggacttgtaaggggt
ggcatgggaagagctgtcattactaatcagccaccctccacttcctcccatacttctggt
attgtggttcctagcactataattcttggtagcgttccttctacatctgaagtgacaatg
agaaacattatgggagttgaagaacgggctggtaacagtggcatggttcagtccatggtt
tcccctttaagtaatagaatcgttttgcctacagcagctaaagttagtgatggaacaact
acagttgatcctagcaatgttagtgatgcagcggctataggtggtcgggttttctctcca
tctgtggttcctagcatgcagtggaggccaggaagttcttttcaaaatccgaatgaagga
gggcagtttcgtggaagagctgaaatagcaccagatcagagggagaagttcttgcagcgc
ctccaacaagttcagcaacagggccatagtacacttcttggcatgactcttggtggagga
aatcacaagcaattttcttcacaacagcaaagttcacttcttcagcagttcaactcccaa
aattcatctgtcacttctcaagctggtctgggaataggagttcaagcacctggagtaaat
gctgttacctctggctcattacagcagcagccaacttccttccagcagtctaatcagcaa
gcattaatgacaactggggcaaaagattctgatgttgcccattcaaaagttgaggaggag
cagcagcagcaacagcagcaacaaagtttacccgaggatactactgattctgcttctgct
tctgcttctgcttctgcttctgtccttggaaagaatctgatgaacgatgatgacttaaaa
ggatcatatgcggtagatactccagctggtgtacctgcttcattgaccgagactgcttca
gtgtcaagagaagatgacctttctcctggtcaacctttgcagcctggccaaccttctgga
agtcttggtgtcattggccgaagaagtgtttctgacttgggcgccattggtgatagcctt
ggtggatcctcgatggctactggaggaatgcatgatcaattctacaatttgcaaatgctt
gaagctgcatactataagctacctcagccgaaagactcagagcgtccaaggagttatact
ccaagacaccctgcaattactcctccgagctatcctcaagtgcaggcacctattataaac
aatcctgctttttgggatcgattaggtctcgagacctatggcactgacacattgttcttt
gcattttactatcaaccgaacacctatcaacaatatttggctgctagagaattaaagaaa
caatcttggagatatcacagaaaataccagacatggttccaaagacatgaagagccaaaa
gttgctacagatgaatatgagcagggaacttatgtgtacttcgattttcatgttaataat
gatgacctacaacatggatggtgccaaaggattaaaaccgagttcacttttgagtataac
tacctcgaagatgaactcaatatatag
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