Cucurbita moschata (crookneck pumpkin): 111440528
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Entry
111440528 CDS
T05248
Name
(RefSeq) WD-40 repeat-containing protein MSI4
KO
K10752
histone-binding protein RBBP4
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03082
ATP-dependent chromatin remodeling
cmos03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
111440528
03083 Polycomb repressive complex
111440528
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cmos03036
]
111440528
Chromosome and associated proteins [BR:
cmos03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
111440528
Histone modification proteins
HAT complexes
HATB complex
111440528
HDAC complexes
Sin3A-HDAC complex
111440528
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
111440528
PRC2.2
111440528
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
111440528
Heterochromatin formation proteins
Other heterochromatin formation proteins
111440528
Chromatin remodeling factors
NuRD complex
111440528
NuRF complex
111440528
NuRF complex (fruit fly)
111440528
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
CAF1C_H4-bd
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EIPR1
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
Beta-prop_RIG_2nd
Beta-prop_EML
WDR55
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
Beta-prop_DCAF12
eIF2A
Beta-prop_IFT122_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_SPT8
WDR90_beta-prop_4th
Beta-prop_WDR35_TULP_N
WD40_RFWD3
Beta-prop_IFT140_1st
ANAPC4_WD40
Beta-prop_WDR19_1st
Beta-prop_IP5PC_F
DUF3798
Motif
Other DBs
NCBI-GeneID:
111440528
NCBI-ProteinID:
XP_022933315
UniProt:
A0A6J1F4J3
LinkDB
All DBs
Position
Unknown
AA seq
514 aa
AA seq
DB search
MDSSQSQQQQQQQQQPQQQQPQLQQQPVKKKETRGRKPKPKDEKKDEQQAKKMKAQQQPS
VDERYTQWKSLVPVLYDWFANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPN
TLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKYKTIIHPGEVNRIRELPQNARIVATH
TDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQENAEFALAMCPTEPYVLSGGKDKL
VVLWSIQDHITTAASDAAASKSPGSGGSIIKKAGEANDKTAEGPSIGPRGVYHGHEDTVE
DVTFCPSNAQEFCSVGDDSCLILWDARTGTSPAVKVEKAHNADLHCVDWNPHDDNLIITG
SADNSIRLFDRRNLTSNGVGSPIYKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDY
DKVGKKTERATRTPAAPPGLFFQHAGHRDKVVDFHWNASDPWTLVSVSDDCDTTGGGGTL
QIWRMSDLIYRPEDEVLAELEKFKSHVIECAAKP
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atggactcttctcagtcgcagcagcagcagcagcagcagcaacagcctcaacaacagcaa
ccgcagctgcagcagcaacctgtgaagaagaaggagaccagaggccgcaagccgaagccc
aaggacgagaagaaggacgagcagcaagctaagaagatgaaggctcagcaacaaccctct
gtcgacgagcgctacactcagtggaagtctcttgttcctgttctttacgactggttcgcc
aaccacaatcttgtttggccttctctctcttgccggtggggtcctcagctcgagcaagcg
acgtataagaatcgacagcgactttatctatctgaacagactgatggtagtgttccgaat
acactggtcattgcaaattgtgaagttgtgaagcccagggttgcagctgcggagcacatt
tctcagttcaatgaagaagcacgctctccatttgtaaagaagtacaagactatcatacac
cctggtgaggttaacagaattagggaacttccccagaatgctagaattgttgccacacac
actgatagtccagatgttctcatttgggatgttgaggcacaacctaatcgtcatgctgtc
cttggtgccacaaattctcgcccagatttgattcttactggtcatcaagaaaatgctgag
tttgctctagcaatgtgccccactgaaccttatgttctctctggagggaaggacaagtta
gtagttttatggagtatccaggaccatataacaactgccgcctcagacgctgctgcctca
aagtcaccaggatctggtggttctatcataaaaaaggcaggagaagcaaatgataaaact
gctgaagggccttctattgggccacgaggagtttaccatggccacgaggatactgttgaa
gatgttaccttctgtccgtccaatgcacaggagttttgcagtgtgggagatgattcttgc
ctgatattatgggatgctcgtactggcactagtccagctgtaaaggtcgagaaagcacat
aatgctgatcttcattgtgttgattggaatccccatgatgataatcttatcataacaggt
tcagcagataattctattcgcttgttcgatcgtcgtaatctcacttctaatggagtaggc
tcacccatctataaatttgagggccacaaagctgctgttctttgtgttcagtggtcccca
gataaatcatccgtctttggaagttctgcagaggatgggctgttaaatatttgggactat
gataaggttggtaaaaagacagaacgagctacaaggacacctgctgctcctccaggctta
tttttccagcatgctgggcacagggataaagtcgttgatttccattggaatgcttctgat
ccatggactcttgtcagtgtatctgatgattgtgatacgactggtggaggagggacgttg
cagatatggcgcatgagtgatctaatttatcggccggaagatgaggtgttagctgagctt
gaaaagttcaagtctcacgtaattgaatgtgctgcaaagccttga
DBGET
integrated database retrieval system
