Cucurbita moschata (crookneck pumpkin): 111441633
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Entry
111441633 CDS
T05248
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 46-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111441633
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cmos03041
]
111441633
03009 Ribosome biogenesis [BR:
cmos03009
]
111441633
Enzymes [BR:
cmos01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111441633
Spliceosome [BR:
cmos03041
]
Complex A
U1 snRNP components
U1 related factors
111441633
Complex B
111441633
Ribosome biogenesis [BR:
cmos03009
]
Eukaryotic type
Pre-60S particles
Helicases
111441633
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
111441633
NCBI-ProteinID:
XP_022934461
UniProt:
A0A6J1F1W1
LinkDB
All DBs
Position
Unknown
AA seq
762 aa
AA seq
DB search
MAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLNSS
IVSISSSVQVQKPSSGHSYGNNLNESNDKYGRVSHGAPKHEVARGETFQSHDTLNGLSST
GHGGASLKGHRPSDAGSCLSAESYRQRHEITFSGDNVPPPFSSFEATGFPPEILREVHNA
GFSAPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLIPGFIHLKRIRSDPKLGPTVLVL
SPTRELATQIQDEAVKFGKSSRISCACLYGGAPKGPQLRDIDRGVDIVVATPGRLNDILE
MRRISLHQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPKEVRKIASDL
LVNPIQVNIGNVDELVANKSITQHIEALAPLEKHRRLEQILRSQEPGSKVIIFCSTKKMC
DQLARNLTRQFGAAAIHGDKSQGERDHVLGQFRTGRTPVLVATDVAARGLDIKDIRVVIN
YDFPSGVEDYVHRIGRTGRAGATGIAYTFFGEQDAKYASDLIKILEGANQRVPPELRDMA
SRSYGMAKFRRWGSGSDGRDGGRGGRNDSNSGGRGGLGMSSFSSAKPERGGGRGYDFDSR
ERYDSGYNNCGRSRSPPRGVGGDRTKSWNCDHSPPISHERSPVRSFHQAMMERNNIPPRG
NENASKNGSGSWNQCRSRSRSRSRSPNRFNRAPAVRERSPVLSFHKAMLEKGNPDKDSRK
SPSDRTDSGEYEKRSRPSYPPQEEVEEGMIPQDDQSKGEADR
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atggcggctactgctactgctgtgtctgttggcccacgatatgcgccagaggatccaacc
cttcccaaaccatggagaggtttagttgatggaaaaacagggtatctttacttttggaat
ccagaaactaatgtcacccaatacgagagacctgtggctgctgctcctcttaattcatca
atagtgtccataagttcttcagttcaagttcaaaagccctcttcaggccactcttatggc
aacaatttgaatgaaagtaacgataagtatggaagagtttcccatggggcacccaaacat
gaggttgcaaggggtgaaacctttcagtcacatgataccttaaatggactatctagtact
ggacatggaggagcatcattgaaaggacatagaccgtcagatgctggaagttgtttatct
gcagagtcttatcgacagcgacatgaaataactttttcgggagataatgtgccgccacca
ttttcatcatttgaagccactggtttcccacctgagattcttagggaggtacataatgca
gggttctctgctccaactccaattcaggcgcaatcatggccaattgctcttcaaagtaga
gatattgtagctattgctaaaacaggctcaggaaaaactcttgggtacttaatacctggt
tttattcatctcaagcgcattcgaagtgatcctaagctaggccctactgttttggtgctg
tcaccaacaagggaattggcaacacagattcaagatgaagccgtgaagtttgggaaatca
tcaagaatctcttgtgcgtgtctatatggaggagcaccaaagggtccacaattgagggat
atagaccgtggagtagatattgtagttgcaactcctggtcgtttgaatgatattctcgag
atgaggagaatcagtctacatcaggtttcatatcttgtactagatgaggctgatcggatg
ctggacatgggttttgaaccccagattagaaagattgtaaaagaggtacctgctcgacgg
cagaccttaatgtacacagctacttggcccaaagaagttcgcaaaattgcatcagatctg
cttgttaatcctattcaagtcaatattggcaatgttgacgagcttgttgcgaacaagtcc
atcactcagcatattgaagccttagcaccactggagaagcatagacgattggagcagata
ttgagatctcaagaaccaggatcaaaagtcataattttctgttctacaaagaaaatgtgt
gatcagcttgctcgcaatcttacacgccaatttggagctgctgcaattcatggagacaaa
tcccagggtgagagagatcatgttcttggccaatttcgcaccggtaggactcctgtgctt
gtagctactgatgttgctgctcgaggattggatattaaagacatcagggttgttattaac
tatgatttcccatccggagtggaggattatgtccataggattggtcgaactggaagagca
ggagctactggtattgcttacacattctttggtgagcaggacgccaagtatgcttcagat
ctgataaaaattttggagggagctaaccagcgagtcccaccagaacttcgtgatatggct
tctcgaagctatggaatggccaagttcaggcgttggggttctggctctgatggtcgtgac
gggggtcggggtgggcgcaatgattcaaattctggtggtaggggtggactgggaatgtct
tccttttcttctgccaagccagaacgaggtggtggccgtggatatgactttgactcacga
gagaggtatgattctggatacaacaactgtggtcgcagtcggagtcctccaaggggtgtg
ggaggtgaccgaactaaaagttggaactgcgatcacagcccacccatttcacatgaacgc
tctccagtacggagttttcaccaagcaatgatggagcgtaacaacattcctccacgagga
aatgaaaatgctagtaagaacggttcaggaagctggaaccaatgccgaagtcgtagccgt
agtagaagccgaagtccaaaccgttttaaccgggctcctgcagtacgagaacgttctcca
gttttgagttttcacaaagcaatgttggaaaagggaaacccagataaggattcgagaaaa
tcacccagcgataggacggacagtggagaatatgaaaagagatctcgcccctcatatcct
cctcaagaagaggtcgaggaaggcatgatcccacaagatgaccaaagtaagggagaagca
gacagataa
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