Cucurbita moschata (crookneck pumpkin): 111441797
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Entry
111441797 CDS
T05248
Name
(RefSeq) ATP-dependent DNA helicase 2 subunit KU80
KO
K10885
ATP-dependent DNA helicase 2 subunit 2
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
111441797
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cmos03400
]
111441797
DNA repair and recombination proteins [BR:
cmos03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA-PK complex
111441797
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ku
Ku_PK_bind
Ku_N
Ku_C
DIM1
Motif
Other DBs
NCBI-GeneID:
111441797
NCBI-ProteinID:
XP_022934682
UniProt:
A0A6J1F3H8
LinkDB
All DBs
Position
Unknown
AA seq
699 aa
AA seq
DB search
MARNREILVLVLDVGPSMHSILPEVEKVCSMLVEKKLIYSKYDEVGIVLFGTKETKNELT
EEVGGYQHVVVLQNMKVVDGDLVDVLKRLPRGTVSGDFLDAIIVGMDMLIKKFGETEKGK
KRLCLITDALFPIKEPYEGTKEDQVSAIAQQMTKHGMRMDSVVVRRRFGRDADEKMMDEN
DVLLNIFSEKTNAKMVYVESPTSLLGAIRTRSISPVTIYRGDLEISSVIKIKVWVYKKTS
EEKFPTLKRYSDKAPSTDKFATHEVKVDYEYKSAEDTSKVVPPEHRIKGYRYGPQVIPIS
TAEWDAVKFKPEKSVKLLGFTNASNIMRHYYMKDVNVFIAEPGNKRAIVAVSALARAMKE
MDKVAIVRCVWRQGQGSVVVGVLTPNISEKNGIADSLYFNVLPFAEDVREFQFPSFNNFP
ALMQPSEEQQEAADEFVKMLDLAPSGREEILQPDFTPNPVLERFYRHLELKSKDPAAAVP
PLDATLQKITEPDPDLLSQNKSGIGTFDRRFELKENPKLKKPRRLYLREKPSGSSDKEDN
EEISAQIVVSAANTRLVKVEKIGDSTPLQDFEAMMSRRDSPEWINKAINEMKNKIFDLVE
NSCDGDNYPKALEYLLALRKGCIIEQEPTQFNDFLRHLCKFCLEKNLHSFCELLAFERLS
LISKKEAADSEVADDEARSFLVKMEPKFEPKMDPKLEQI
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atggctcgcaacagggaaatcttggtgcttgtgctggatgttggtccatcaatgcactct
attctccctgaggttgaaaaagtgtgttcaatgctggtggagaagaagctgatttacagc
aaatatgatgaagtgggaattgttctatttggaaccaaagaaacgaaaaacgagctaaca
gaggaagttggtgggtatcagcatgtggtggttctacagaacatgaaggttgttgatgga
gatctcgttgatgttttaaaacgactccctcgagggaccgtttccggtgattttcttgat
gccataattgtgggaatggatatgttgattaagaaatttggagagacagaaaaaggaaag
aaacgcttatgccttattactgatgctctattccctataaaagaaccttatgaagggact
aaagaggaccaagtttcggccattgcgcagcagatgacaaaacacggcatgagaatggat
agtgtcgttgtgagaaggaggttcggtcgggatgcagatgagaaaatgatggacgagaac
gacgttctcttgaacatattttcagagaaaacgaatgcaaaaatggtgtatgtggagagc
ccaacttcgttattaggtgcaatccggactcggagtatatcgcccgtgacaatttataga
ggcgatcttgaaataagctctgtcatcaagattaaggtatgggtttataagaaaacatca
gaagagaagtttccaactctgaaaagatattctgataaggcaccttcaactgataaattt
gccacacatgaagtcaaggtagattacgagtacaaaagcgccgaagacactagtaaggtc
gtgcctccagaacataggattaaaggatatcgttacggacctcaagtgattccgatatca
actgctgaatgggatgcagtcaagttcaaaccagaaaagagcgtgaagcttctcggattt
acgaatgcatcgaatataatgcggcactactacatgaaagacgtcaatgtctttattgct
gaacctggcaataaaagagccattgttgcagtttctgcactagcaagagcaatgaaggaa
atggacaaagtggcgatagtgcgatgcgtttggagacaaggacaggggagcgtcgtcgtc
ggtgtcttgacacccaacatatcggagaagaatggtattgccgattcattatacttcaat
gtacttccctttgcggaggatgttcgagaattccagtttccttctttcaacaattttcca
gcattgatgcagccgagcgaagaacagcaagaggcagcggacgaattcgttaagatgctt
gatcttgcaccatctggacgggaggaaattctgcaaccggatttcacaccaaatcctgtt
cttgagcgcttctatcgtcatctcgagttgaaatcgaaggatccagctgcggctgtacct
ccactcgatgcaactctccagaagattaccgagccagatcccgacttgttgtctcaaaac
aaatctggtattggcacattcgacagaagattcgaactcaaggagaatccaaagctaaag
aaaccaagaaggctatatttacgcgaaaaaccatccggttcgagcgacaaagaggataat
gaagaaatttctgctcaaattgtcgtctccgctgccaatacgcggttagtcaaggtagaa
aaaatcggagattcaacacctctccaagattttgaagctatgatgtctagaagagatagt
ccagagtggatcaataaagcaatcaatgaaatgaaaaacaaaattttcgaccttgtcgag
aactcctgcgacggtgataactatccaaaagctctcgagtatctactagcgctacgcaag
ggttgcatcattgaacaagaaccgacgcaattcaacgatttcctccgccatctctgtaaa
ttttgcctggaaaagaacctccatagcttctgtgagctccttgcattcgaacgacttagc
ttgatctccaagaaagaagcggccgacagtgaagtagctgatgatgaagctagaagcttt
ttggttaaaatggagcctaaatttgagcctaaaatggatcccaaattagagcaaatctag
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